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Alpha 1-antitrypsin deficiency



Gastrointestinal system


Peritoneum and peritoneal cavity
Upper gastrointestinal tract disorders
Lower gastrointestinal tract disorders
Liver, gallbladder and pancreas disorders
Gastrointestinal system pathology review

Alpha 1-antitrypsin deficiency


0 / 8 complete


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High Yield Notes
13 pages

Alpha 1-antitrypsin deficiency

8 flashcards

USMLE® Step 1 style questions USMLE

4 questions

A 41-year-old female comes to the physician for evaluation of shortness of breath over the past few months. She has had no fever or weight loss over this time period. Past medical history is noncontributory and she does not take any medications. The patient drinks 2 or 3 glasses of wine on the weekends and does not use tobacco or illicit drugs. Vital signs are within normal limits. On physical examination, the expiratory phase is prolonged and scattered wheezes are heard bilaterally. The liver is palpated 4 cm below the costal margin. No palmar erythema, spider angiomata, or ascites are noted. Laboratory results show elevated liver enzymes. Pulmonary function testing is performed and is shown below:

Images reproduced from Wikimedia Commons

The physician suspects a genetic condition. Which of the following is most likely to reveal the cause of this patient’s underlying disease process?


Content Reviewers:

Rishi Desai, MD, MPH

Alpha-1 antitrypsin deficiency is a genetic disorder in which a protein called alpha-1 antitrypsin is defective or absent, and it causes lung and liver disease.

Trypsins are a type of protease, which is an enzyme that can break down other proteins.

So this antitrypsin protein is a protease inhibitor, and inactivates trypsins, thereby preventing protein breakdown.

The “alpha-1” is just a holdover from when the protein was discovered – a letter and number combination given before its role was known.

Now, in the lungs, if we zoom in on a tiny alveolus—where gas exchange happens—if there’s some sort of infection or other cause of inflammation, immune cells like neutrophils arrive on the scene.

Neutrophils make an enzyme called neutrophil elastase, a protease capable of breaking down elastin, which is an extracellular matrix protein that gives elasticity and strength to lung tissues.

So while these little guys can help fight off infection by breaking down proteins of the bacteria, it can also go on to break down that precious elastin.

Fortunately, the liver makes alpha-1 antitrypsin which gets released into the blood and sent to the lungs, where it inhibits neutrophil elastase just like it inhibits trypsin, inactivating it before it can break down the protein elastin.

Without alpha-1 antitrypsin, the opposite happens - neutrophil elastase goes unchecked, and it damages the walls of the alveoli, and without that elastin, the alveoli loses its elasticity and structural integrity.

Zooming out a bit and looking at the acinus, which is a bunch of alveoli, it just turns into one big cavity. This destruction and enlargement of the air spaces is called emphysema.

It turns out that emphysema can develop in a couple different ways, and alpha-1 antitrypsin deficiency causes pan-acinar emphysema, meaning the whole acinus is affected, and it also tends to affect the lungs’ lower lobes the most.

Another effect of unchecked inflammation in alpha-1 antitrypsin deficiency is chronic bronchitis, resulting from increased mucus production and narrowing of the airways.

So alpha-1 antitrypsin deficiency can lead to both emphysema and chronic bronchitis, the two types of chronic obstructive pulmonary disease, or COPD.

Another, more common cause of COPD is smoking, and if someone with alpha-1 antitrypsin deficiency also smokes, they tend to get an earlier onset of COPD than they have otherwise, an example of a gene-environment interaction.

The gene that encodes alpha-1 antitrypsin protein is called SERPINA1, which stands for serpin peptidase inhibitor, clade A, member 1.

While some mutations in SERPINA1 completely abolish the gene’s message meaning no protein, others like the most common mutation, called Pi*Z, results in a misfolded alpha-1 antitrypsin protein being made.

Misfolded alpha-1 antitrypsin can aggregate and get stuck in the endoplasmic reticulum of the liver hepatocytes where it’s made, causing some of those cells to die.

Now, each wild-type, or normal, copy of alpha-1 antitrypsin protein, termed M, contributes 50% of normal A1AT activity, meaning two normal copies gets you 100%, which just means there’s a normal amount of A1AT in the blood.

If instead they had one normal copy and one mutant copy, Z, abbreviated PiMZ, the mutated gene only contributes ~ 10% normal amounts, so these individuals only have about 60% the normal levels, which is usually enough to protect the lungs in non-smokers.

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  2. "Harrison's Principles of Internal Medicine, Twentieth Edition (Vol.1 & Vol.2)" McGraw-Hill Education / Medical (2018)
  3. "Pathophysiology of Disease: An Introduction to Clinical Medicine 8E" McGraw-Hill Education / Medical (2018)
  4. "CURRENT Medical Diagnosis and Treatment 2020" McGraw-Hill Education / Medical (2019)
  5. "Alpha-1-Antitrypsin Deficiency Liver Disease" Clinics in Liver Disease (2018)
  6. "The Diagnosis and Management of Alpha-1 Antitrypsin Deficiency in the Adult" Chronic Obstructive Pulmonary Diseases: Journal of the COPD Foundation (2016)