Pneumonia: Pathology review

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Pneumonia: Pathology review

End of Rotation™ exam review

Cardiovascular

Anatomy clinical correlates: Heart
Anatomy clinical correlates: Mediastinum
Aortic dissections and aneurysms: Pathology review
Coronary artery disease: Pathology review
Peripheral artery disease: Pathology review
Cardiovascular disease screening: Clinical sciences
Carotid artery stenosis screening: Clinical sciences
Abdominal aortic aneurysm: Clinical sciences
Acute coronary syndrome: Clinical sciences
Acute limb ischemia: Clinical sciences
Acute mesenteric ischemia: Clinical sciences
Aortic dissection: Clinical sciences
Approach to chest pain: Clinical sciences
Approach to dyspnea: Clinical sciences
Approach to syncope: Clinical sciences
Ischemic colitis: Clinical sciences
Chronic mesenteric ischemia: Clinical sciences
Coronary artery disease: Clinical sciences
Peripheral arterial disease and ulcers: Clinical sciences
Venous insufficiency and ulcers: Clinical sciences
ACE inhibitors, ARBs and direct renin inhibitors
Adrenergic antagonists: Alpha blockers
Adrenergic antagonists: Beta blockers
Adrenergic antagonists: Presynaptic
Calcium channel blockers
Cholinomimetics: Direct agonists
Cholinomimetics: Indirect agonists (anticholinesterases)
Class I antiarrhythmics: Sodium channel blockers
Class II antiarrhythmics: Beta blockers
Class III antiarrhythmics: Potassium channel blockers
Class IV antiarrhythmics: Calcium channel blockers and others
Lipid-lowering medications: Fibrates
Lipid-lowering medications: Statins
Miscellaneous lipid-lowering medications
Muscarinic antagonists
Positive inotropic medications
Sympatholytics: Alpha-2 agonists
Sympathomimetics: Direct agonists
Thiazide and thiazide-like diuretics

Gastrointestinal and nutritional

Anatomy clinical correlates: Anterior and posterior abdominal wall
Anatomy clinical correlates: Inguinal region
Anatomy clinical correlates: Peritoneum and diaphragm
Anatomy clinical correlates: Viscera of the gastrointestinal tract
Anatomy clinical correlates: Other abdominal organs
Appendicitis: Pathology review
Colorectal polyps and cancer: Pathology review
Diverticular disease: Pathology review
Eating disorders: Pathology review
Esophageal disorders: Pathology review
Gallbladder disorders: Pathology review
Gastrointestinal bleeding: Pathology review
GERD, peptic ulcers, gastritis, and stomach cancer: Pathology review
Inflammatory bowel disease: Pathology review
Jaundice: Pathology review
Pancreatitis: Pathology review
Colorectal cancer screening: Clinical sciences
Acute pancreatitis: Clinical sciences
Approach to acute abdominal pain (pediatrics): Clinical sciences
Approach to the acute abdomen (pediatrics): Clinical sciences
Approach to biliary colic: Clinical sciences
Approach to upper abdominal pain: Clinical sciences
Anal cancer: Clinical sciences
Anal fissure: Clinical sciences
Approach to chronic abdominal pain (pediatrics): Clinical sciences
Approach to vomiting (acute): Clinical sciences
Appendicitis: Clinical sciences
Approach to constipation (pediatrics): Clinical sciences
Approach to vomiting (chronic): Clinical sciences
Approach to constipation: Clinical sciences
Approach to abdominal wall and groin masses: Clinical sciences
Approach to vomiting (newborn and infant): Clinical sciences
Approach to vomiting (pediatrics): Clinical sciences
Approach to diarrhea (chronic): Clinical sciences
Cholecystitis: Clinical sciences
Approach to diarrhea (pediatrics): Clinical sciences
Choledocholithiasis and cholangitis: Clinical sciences
Approach to hematochezia (pediatrics): Clinical sciences
Chronic pancreatitis: Clinical sciences
Approach to hematochezia: Clinical sciences
Colonic volvulus: Clinical sciences
Approach to hepatic masses: Clinical sciences
Colorectal cancer: Clinical sciences
Approach to jaundice (conjugated hyperbilirubinemia): Clinical sciences
Diverticulitis: Clinical sciences
Approach to jaundice (newborn and infant): Clinical sciences
Approach to jaundice (unconjugated hyperbilirubinemia): Clinical sciences
Esophageal cancer: Clinical sciences
Esophageal perforation: Clinical sciences
Approach to melena and hematemesis (pediatrics): Clinical sciences
Approach to melena and hematemesis: Clinical sciences
Fecal impaction: Clinical sciences
Femoral hernias: Clinical sciences
Approach to pancreatic masses: Clinical sciences
Gastric cancer: Clinical sciences
Approach to perianal problems: Clinical sciences
Approach to periumbilical and lower abdominal pain: Clinical sciences
Gastroesophageal reflux disease: Clinical sciences
Approach to pneumoperitoneum and peritonitis (perforated viscus): Clinical sciences
Gastroesophageal varices: Clinical sciences
Approach to postoperative abdominal pain: Clinical sciences
Hemorrhoids: Clinical sciences
Hepatocellular carcinoma: Clinical sciences
Ileus: Clinical sciences
Inflammatory bowel disease (Crohn disease): Clinical sciences
Inflammatory bowel disease (ulcerative colitis): Clinical sciences
Inguinal hernias: Clinical sciences
Intra-abdominal abscess: Clinical sciences
Ischemic colitis: Clinical sciences
Large bowel obstruction: Clinical sciences
Medication-induced constipation: Clinical sciences
Pancreatic cancer: Clinical sciences
Paraesophageal and hiatal hernia: Clinical sciences
Peptic ulcer disease: Clinical sciences
Perianal abscess and fistula: Clinical sciences
Pilonidal disease: Clinical sciences
Pyloric stenosis: Clinical sciences
Small bowel obstruction: Clinical sciences
Umbilical hernias: Clinical sciences
Ventral and incisional hernias: Clinical sciences
Acid reducing medications
Antidiarrheals
Laxatives and cathartics

Neurology

Anatomy clinical correlates: Cerebral hemispheres
Anatomy clinical correlates: Cerebellum and brainstem
Anatomy clinical correlates: Anterior blood supply to the brain
Anatomy clinical correlates: Posterior blood supply to the brain
Anatomy clinical correlates: Olfactory (CN I) and optic (CN II) nerves
Anatomy clinical correlates: Oculomotor (CN III), trochlear (CN IV) and abducens (CN VI) nerves
Anatomy clinical correlates: Trigeminal nerve (CN V)
Anatomy clinical correlates: Facial (CN VII) and vestibulocochlear (CN VIII) nerves
Anatomy clinical correlates: Glossopharyngeal (CN IX), vagus (X), spinal accessory (CN XI) and hypoglossal (CN XII) nerves
Anatomy clinical correlates: Spinal cord pathways
Anatomy clinical correlates: Vertebral canal
Adult brain tumors: Pathology review
Amnesia, dissociative disorders and delirium: Pathology review
Cerebral vascular disease: Pathology review
Traumatic brain injury: Pathology review
Carotid artery stenosis screening: Clinical sciences
Acute stroke (ischemic or hemorrhagic) or TIA: Clinical sciences
Approach to acute vision loss: Clinical sciences
Approach to aphasia: Clinical sciences
Approach to blunt cerebrovascular injury: Clinical sciences
Approach to diplopia: Clinical sciences
Approach to traumatic brain injury (pediatrics): Clinical sciences
Approach to traumatic brain injury: Clinical sciences
Subarachnoid hemorrhage: Clinical sciences
Anti-parkinson medications
Anticonvulsants and anxiolytics: Barbiturates
Anticonvulsants and anxiolytics: Benzodiazepines
Antiplatelet medications
General anesthetics
Local anesthetics
Medications for neurodegenerative diseases
Migraine medications
Neuromuscular blockers
Nonbenzodiazepine anticonvulsants
Osmotic diuretics
Thrombolytics

Preoperative and postoperative care

Acid-base disturbances: Pathology review
Adrenal insufficiency: Pathology review
Coronary artery disease: Pathology review
Deep vein thrombosis and pulmonary embolism: Pathology review
Diabetes mellitus: Pathology review
Drug misuse, intoxication and withdrawal: Alcohol: Pathology review
Drug misuse, intoxication and withdrawal: Hallucinogens: Pathology review
Drug misuse, intoxication and withdrawal: Other depressants: Pathology review
Drug misuse, intoxication and withdrawal: Stimulants: Pathology review
Electrolyte disturbances: Pathology review
Heart blocks: Pathology review
Heart failure: Pathology review
Obstructive lung diseases: Pathology review
Supraventricular arrhythmias: Pathology review
Thrombosis syndromes (hypercoagulability): Pathology review
Valvular heart disease: Pathology review
Ventricular arrhythmias: Pathology review
Acute coronary syndrome: Clinical sciences
Adrenal insufficiency: Clinical sciences
Alcohol use disorder: Clinical sciences
Alcohol withdrawal: Clinical sciences
Aortic stenosis: Clinical sciences
Approach to a postoperative fever: Clinical sciences
Approach to acid-base disorders: Clinical sciences
Approach to ascites: Clinical sciences
Approach to bradycardia: Clinical sciences
Approach to hypercalcemia: Clinical sciences
Approach to hyperkalemia: Clinical sciences
Approach to hypernatremia: Clinical sciences
Approach to hypocalcemia: Clinical sciences
Approach to hypokalemia: Clinical sciences
Approach to hyponatremia: Clinical sciences
Approach to lower limb edema: Clinical sciences
Approach to metabolic acidosis: Clinical sciences
Approach to metabolic alkalosis: Clinical sciences
Approach to nosocomial infections: Clinical sciences
Approach to postoperative abdominal pain: Clinical sciences
Approach to postoperative acute kidney injury: Clinical sciences
Approach to postoperative hypotension: Clinical sciences
Approach to postoperative respiratory distress: Clinical sciences
Approach to postoperative wound complications: Clinical sciences
Approach to respiratory acidosis: Clinical sciences
Approach to respiratory alkalosis: Clinical sciences
Approach to tachycardia: Clinical sciences
Asthma: Clinical sciences
Atrial fibrillation and atrial flutter: Clinical sciences
Atrioventricular block: Clinical sciences
Central line-associated bloodstream infection: Clinical sciences
Chronic obstructive pulmonary disease: Clinical sciences
Congestive heart failure: Clinical sciences
Coronary artery disease: Clinical sciences
Deep vein thrombosis: Clinical sciences
Delirium: Clinical sciences
Diabetes mellitus (Type 1): Clinical sciences
Diabetes mellitus (Type 2): Clinical sciences
Diabetic ketoacidosis: Clinical sciences
Essential hypertension: Clinical sciences
Hyperosmolar hyperglycemic state: Clinical sciences
Hypovolemic shock: Clinical sciences
Medication-induced constipation: Clinical sciences
Opioid intoxication and overdose: Clinical sciences
Opioid use disorder: Clinical sciences
Opioid withdrawal syndrome: Clinical sciences
Pressure-induced skin and soft tissue injury: Clinical sciences
Pulmonary embolism: Clinical sciences
Right heart failure (cor pulmonale): Clinical sciences
Substance use disorder: Clinical sciences
Surgical site infection: Clinical sciences
Tobacco use: Clinical sciences
Ventricular tachycardia: Clinical sciences
Acetaminophen (Paracetamol)
Anticoagulants: Direct factor inhibitors
Anticoagulants: Heparin
Anticoagulants: Warfarin
Antiplatelet medications
Cell wall synthesis inhibitors: Cephalosporins
DNA synthesis inhibitors: Metronidazole
Glucocorticoids
Insulins
Laxatives and cathartics
Miscellaneous cell wall synthesis inhibitors
Non-steroidal anti-inflammatory drugs
Opioid agonists, mixed agonist-antagonists and partial agonists
Protein synthesis inhibitors: Aminoglycosides

Assessments

USMLE® Step 1 questions

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Questions

USMLE® Step 1 style questions USMLE

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A 32-year-old man presents to his primary care provider for evaluation of fatigue and a nonproductive cough, which developed one month ago. Medical history is notable for hypertension and HIV infection. The patient is uninsured and has limited access to healthcare. He has not traveled overseas and has been living in Ohio for the past five years. Temperature is 38.2°C (100.8°F), blood pressure is 148/83 mmHg, and pulse is 98/min. On physical examination, the lung fields are clear to auscultation. Verrucous lesions are present over the trunk and upper extremities. Abdominal examination is unremarkable. No oral mucosal lesions are identified. Which of the following best describes the microscopic appearance of the organism responsible for this patient’s symptoms?  

Transcript

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Two people came to your clinic one day.

Mariah is a 54-year-old smoker, who came in with with productive cough with yellow sputum and left-sided chest pain.

Physical examination reveals fever, tachycardia, and tachypnea. Her lung sounds are barely audible, but it had crackles at the left base.

Next is Jeremy, a 64-year-old man who was hospitalized for a stroke 2 weeks ago.

He recently developed a cough and right-sided chest pain.

He is tachycardic and has a fever of 38.4°C.

Examination reveals fremitus, decreased breath sounds, and dullness to percussion in the right lower lung field.

Chest x-rays were performed which showed a left lower lobe infiltrate in Mariah’s case, and a right lower lobe infiltrate in Jeremy’s.

Now, both people have pneumonia.

So pneumonia is an infection of the lung tissue.

Some microbes can overcome the innate defenses of the lungs and immune system to colonize the bronchioles or alveoli.

These pathogens then triggers an inflammatory response.

Inflammatory cells, such as white blood cells, dead bacteria, proteins and fluid from the damaged tissue, form a fluid called exudate which can be coughed up and expelled from the body.

However they can also accumulate in the lungs, filling up the alveoli.

We can divide pneumonia into “classic” pneumonia or “atypical pneumonia based on symptoms.

So with classical pneumonia, high yield symptoms might include dyspnea, or shortness of breath, fatigue, and fever.

Individuals might also develop pleuritic chest pain, which is characterized by sudden and intense sharp, stabbing, or burning pain in the chest when inhaling and exhaling; and productive cough with yellow sputum.

Besides these, High yield signs that might come up on your exam include dullness to percussion, which suggests that there’s a lung consolidation.

This occurs because the air in the alveoli is replaced by pus and fluid so the sound will lose its normal tympanic or drum-like quality.

There’s also tactile fremitus, which is when you can feel increased vibrations when you place your hand on the individual’s chest or back on the area with the consolidation and they say 99.

Similarly, if you auscultate the area with the consolidation, the “99” will sound louder and this is called bronchophony.

This is because sound waves and vibrations travel better through the fluid-filled consolidated tissue than air-filled healthy tissue.

For a similar reason if you put your stethoscope on the area with the consolidation, you can hear bronchial breath sound where the sound of air moving in the bronchi is transmitted clearly through the consolidated area.

This is higher pitched and louder than the normal vesicular breath sound where sound waves pass through more air filled alveoli.

Next is egophony which is increased resonance in the area with consolidation, so when asked to say the “E” it will sound like the letter “A.”

Late inspiratory crackles can also be heard over the affected area.

Crackles are popping lung sounds made when air passes through the fluid in the collapsed alveoli. Finally, people with pneumonia will often have tachypnea and tachycardia.

Now, there are many ways to categorize pneumonia.

One way would be by the causative microbes.

Usually, pneumonia is caused by viruses and bacteria, and rarely fungi as well. In adults, the most common viral cause is influenza.

This type usually has an abrupt onset and tends to develop secondary bacterial pneumonia.

Next is the typical pneumonia, or the classic bacterial pneumonia and its most often caused by either streptococcus pneumoniae, haemophilus influenzae, or staphylococcus aureus.

“Atypical or walking pneumonia” is also caused by bacteria, but the individual won’t develop the classic symptoms.

In atypical pneumonia with mycoplasma pneumoniae, a bacteria without a cell wall, individuals usually present with insidious onset, headache, nonproductive cough, and sometimes, no fever.

If you see these symptoms in a question prompt, it’s safe to assume the answer is atypical pneumonia with mycoplasma pneumoniae.

Another clue is that it tends to occur in areas with many people packed together like in military recruits training camps and prisons.

Also common in these populations, we have chlamydial pneumonia, and it can be caused by Chlamydophila pneumoniae, Chlamydophila psittaci, and Chlamydia trachomatis.

Now, another cause of atypical pneumonia is legionella pneumophila, which causes more severe symptoms like headaches, mild cough, confusion, high fever, and watery diarrhea.

This bacteria can be found in water-systems or water-based cooling systems in hotels, which is why this infection is also common in travelers.

The next high yield concept is that people in certain age groups are more at risk for certain types of microbial infections.

In neonates, or those younger than 4 weeks, the most common cause of pneumonia are Group B streptococci and Escherichia coli.

In those 4 weeks to 18 years, the condition is typically caused by viruses like the Respiratory syncytial virus, but also by bacteria such as Chlamydia trachomatis, which is more common in those younger than 3, and Chlamydophila pneumoniae, which is usually found in school-aged children.

Streptococcus pneumoniae is also a common cause of pneumonia in this age group.

Next, in those 18 to 40 years, the most common causes are Mycoplasma, Chlamydophila and Streptococcus pneumoniae, but also viruses like influenza.

The last age group is individuals over 40, especially the elderly over 65.

The most frequent causes are Streptococcus pneumoniae, anaerobes, and viruses.

Ok besides age, remember that in IV drug users, pneumonia is usually caused by Staphylococcus aureus and Streptococcus pneumoniae.

These also common causes of pneumonia in people with cystic fibrosis, but a very high yield pathogen associated with CF is Pseudomonas aeruginosa.

Another special group is people who are immunocompromised.

The more frequent causes include Staphylococcus aureus, enteric gram negative rods, and viruses.

HIV+ individuals with a CD4+ lymphocyte count under 200 cells per microliter can also suffer from AIDS-related opportunistic pathogens, like the fungus Pneumocystis jirovecii.

This type of pneumonia can cause respiratory failure or pneumothorax if left untreated, and was a common cause of death in AIDS patients.

Moving on, in those who’ve acquired pneumonia after a viral infection, the most common culprit is either Streptococcus pneumoniae, Staphylococcus aureus, or Haemophilus influenzae.

And finally, in post organ transplant patients who are on immunosuppressants, pneumonia with intranuclear and cytoplasmic inclusion bodies histologically points to opportunistic infection by Cytomegalovirus.

Pneumonia can also be categorized by where it’s acquired.

The most common is community-acquired pneumonia, and it’s when a person gets sick outside of a hospital or healthcare setting. It is usually caused by Streptococcus pneumoniae.

Ok, so next is hospital-acquired pneumonia or nosocomial pneumonia, which is when a person gets pneumonia when they are already hospitalized for something else for at least 2 days.

It tends to be more serious because these individuals often have weakened immune systems and the microbes in hospitals are often resistant to the common antibiotics.

Some high yield bacteria to remember are Methicillin-resistant Staphylococcus aureus or MRSA, which is usually carried by asymptomatic hospital staff; Legionella pneumophila, which can be found in water-systems or water-based cooling systems in hospitals is also common.

Another category is ventilator-associated pneumonia, which is a subset of hospital-acquired pneumonia.

It often develops when ill individuals are intubated for more than 48 hours. Oftentimes, bacteria like Pseudomonas aeruginosa and Staph. aureus can form a biofilm on the endotracheal tube.

Sources

  1. "Robbins Basic Pathology" Elsevier (2017)
  2. "Harrison's Principles of Internal Medicine, Twentieth Edition (Vol.1 & Vol.2)" McGraw-Hill Education / Medical (2018)
  3. "Pathophysiology of Disease: An Introduction to Clinical Medicine 8E" McGraw-Hill Education / Medical (2018)
  4. "CURRENT Medical Diagnosis and Treatment 2020" McGraw-Hill Education / Medical (2019)
  5. "Fishman's Pulmonary Diseases and Disorders, 2-Volume Set, 5th edition" McGraw-Hill Education / Medical (2015)
  6. "Pneumonia: update on diagnosis and management" BMJ (2006)
  7. "Viral pneumonia" The Lancet (2011)
  8. "Community-acquired pneumonia" The Lancet (2015)