Incubation Period

What It Is, Different Types, Examples, and More

Author: Emily Miao, MD, PharmD
Editor: Lily Guo, MD
Editor: Alyssa Haag, MD
Editor: Kelsey LaFayette, DNP, ARNP, FNP-C
Editor: Abbey Richard, MSc
Modified: Apr 13, 2026

What is an incubation period?

An incubation period is the time interval between exposure to a pathogen (e.g., virus, bacteria, or parasite) and the onset of signs or symptoms of illness in an infected person. Incubation periods are an important concept in infectious disease, as they allow researchers and epidemiologists to understand the progression and spread of infectious organisms. Understanding incubation periods can help guide the implementation of public health measures to prevent the spread of infectious diseases, and is useful for setting quarantine durations, and for creating vaccination strategies.
An infographic detailing incubation period.

What is the difference between extrinsic and intrinsic incubation periods?

There are two types of incubation periods: extrinsic incubation and intrinsic incubation. 

The extrinsic incubation period is the time it takes for a pathogen to multiply and cause disease inside the intermediate host (i.e., a host that harbors the pathogen for growth and development, but not up to its sexual maturity). In the case of malaria infection, malaria parasites undergo development in a mosquito before they become infectious to humans. In this case, the extrinsic incubation period is the time it takes for malaria parasites to undergo development inside a mosquito until the mosquito becomes infectious to definitive hosts (e.g., humans). 

On the other hand, the intrinsic incubation period is the time it takes for a pathogen to multiply or complete its development inside a definitive host (i.e., the biological organism in which a pathogen can reproduce). In the case of malaria infection, the intrinsic incubation period is the time between injection of the parasite from mosquitoes into human blood, and the first sign or symptom of malaria (e.g., fevers, chills, myalgias). 

What are examples of incubation periods?

Incubation periods can be discussed in the context of illnesses such as influenza (i.e., flu), coronavirus disease 2019 (COVID-19), and human immunodeficiency virus (HIV). 
 
Influenza viruses often replicate within the respiratory epithelium and respiratory tract of affected individuals. The intrinsic incubation period is relatively short and consists of approximately 1 to 4 days. This is the time it takes for the influenza virus to replicate within the respiratory tract to a significant viral load until it causes signs and symptoms (e.g., cough, sore throat, fever, runny nose). The extrinsic incubation period is the time it takes for the influenza virus to spread to others via respiratory droplets. This occurs when an affected individual coughs, sneezes, or touches objects. Infected individuals may pass the virus to unaffected individuals up to 1 week after initially showing symptoms.  

Another example of a respiratory virus is COVID-19, which also replicates within the respiratory tract. The intrinsic incubation period for COVID-19 ranges from 1 to 2 weeks, with the average period being approximately 5 to 7 days. The extrinsic period is the time it takes for the COVID-19 virus to spread to others via respiratory droplets, which are also spread through coughing, sneezing, and touching objects. Infected individuals can pass the virus to unaffected individuals 2 days before symptom presentation and up to 10 days after symptoms appear.  

Then, HIV is a virus that attacks the body’s immune system (e.g., CD4 T cells, dendritic cells) and if left untreated, can lead to acquired immunodeficiency syndrome (AIDS). HIV is transmitted through the exchange of bodily fluids from people living with HIV such as blood, semen, and vaginal secretions. The intrinsic incubation period for HIV ranges widely, from several weeks to months, and in rare cases, even years. During this time, the HIV slowly replicates within immune cells (e.g., CD4 T cells), causing immune destruction. Signs and symptoms may not be present, but some individuals may experience lymphadenopathy (e.g., swollen lymph nodes). During this time, HIV continues to replicate in the body, producing high amounts of viral load, and eventually causing symptomatic disease (e.g., fever, weight loss, lymphadenopathy, nausea, abdominal pain). The extrinsic incubation period may vary depending on host behaviors, as this is the time it takes from the affected host to pass on the virus to an unaffected host. HIV can be spread during activities such as unprotected sexual intercourse and sharing needles and/or syringes. 

What are the most important facts to know about incubation periods?

An incubation period is the time interval between exposure to a pathogen (e.g., virus or bacteria) and the onset of signs or symptoms of illness in an infected person. There are two types of incubation periods: intrinsic incubation and extrinsic incubation. The intrinsic incubation period is the time it takes for a pathogen to multiply or complete its development inside a definitive host. On the other hand, the extrinsic incubation period is the time it takes for a pathogen to multiply and cause disease inside the intermediate host. Incubation periods can help implement public health measures to prevent the spread of infectious diseases, for setting quarantine durations, and for creating vaccination strategies. 

Key Takeaways

Definition 

-Time interval between exposure to a pathogen and the onset of signs or symptoms of illness.  

Usefulness 

-Help guide the implementation of public health measures to prevent the spread of infectious diseases, setting quarantine durations, vaccination strategies 

Extrinsic vs intrinsic incubation periods 

-Extrinsic incubation period = time taken for a pathogen to multiply and cause disease inside the intermediate host  

-Intrinsic incubation period = time taken for a pathogen to multiply or complete its development inside a definitive host  

Examples 

-Influenza virus: intrinsic incubation (replication within the respiratory tract) of 1-4 days  

-COVID-19: intrinsic incubation period of 1-2 weeks (average 5-7 days)  

-HIV: intrinsic incubation period of 2-6 weeks 

References


Centers for Disease and Control and Prevention: COVID-19. https://www.cdc.gov/coronavirus/2019-ncov/index.html. Accessed March 9, 2024. 


Centers for Disease and Control and Prevention: HIV Transmission. https://www.cdc.gov/hiv/basics/transmission.html. Accessed March 9, 2024. 
 
Centers for Disease and Control and Prevention: Influenza.  
https://www.cdc.gov/vaccines/pubs/pinkbook/flu.html#:~:text=The%20incubation%20period%20for%20influenza,of%20influenza%20symptoms%20is%20sudden. Accessed March 9, 2024.  


Lauer SA, Grantz KH, Bi Q, et al. The incubation period of coronavirus disease 2019 (COVID-19) from publicly reported confirmed cases: Estimation and application. Ann Intern Med. 2020;172(9):577-582. doi:10.7326/M20-0504 


Linton NM, Kobayashi T, Yang Y, et al. Incubation period and other epidemiological characteristics of 2019 novel coronavirus infections with right truncation: A statistical analysis of publicly available case data. J Clin Med. 2020;9(2):538. doi:10.3390/jcm9020538