Introduction to biostatistics

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Introduction to biostatistics

Year 1

Year 1

Skin histology
Introduction to pharmacology
Skin anatomy and physiology
Wound healing
Introduction to biostatistics
Types of data
Vaccinations
Inflammation
Nuclear structure
Pharmacodynamics: Agonist, partial agonist and antagonist
DNA structure
Anemia: Clinical
Anatomy of the heart
Hypertension
Hypertension: Clinical
Myocardial infarction
Clinical trials
Mitosis and meiosis
Calcium channel blockers
Class III antiarrhythmics: Potassium channel blockers
Pharmacokinetics: Drug elimination and clearance
Pharmacokinetics: Drug metabolism
Pharmacokinetics: Drug absorption and distribution
Acetaminophen (Paracetamol)
Non-steroidal anti-inflammatory drugs
Opioid agonists, mixed agonist-antagonists and partial agonists
Cardiac muscle histology
Blood histology
Artery and vein histology
Arteriole, venule and capillary histology
Loop diuretics
Thiazide and thiazide-like diuretics
Potassium sparing diuretics
Osmotic diuretics
Carbonic anhydrase inhibitors
Bone histology
Cartilage histology
Skeletal muscle histology
Central nervous system histology
Peripheral nervous system histology
Diabetes mellitus
Phenylketonuria (NORD)
Homocystinuria
Familial hypercholesterolemia
Fats and lipids
Cholesterol metabolism
Carbohydrates and sugars
Proteins
Extracellular matrix
Cytoskeleton and intracellular motility
Cell signaling pathways
Citric acid cycle
Electron transport chain and oxidative phosphorylation
Amino acid metabolism
Nitrogen and urea cycle
Nucleotide metabolism
Introduction to biostatistics
Types of data
Probability
Mean, median, and mode
Range, variance, and standard deviation
Standard error of the mean (Central limit theorem)
Normal distribution and z-scores
Type I and type II errors
Study designs
Ecologic study
Cross sectional study
Case-control study
Cohort study
Randomized control trial
Sensitivity and specificity
Positive and negative predictive value
Test precision and accuracy
Atrophy, aplasia, and hypoplasia
Hyperplasia and hypertrophy
Metaplasia and dysplasia
Bone tumors
Osteomyelitis
Osteoporosis
Osteomalacia and rickets
Septic arthritis
Cauda equina syndrome
The Oral Microbiota and Systemic Health
Bacterial structure and functions
Nasal cavity and larynx histology
Trachea and bronchi histology
Bronchioles and alveoli histology
Inheritance patterns
Mendelian genetics and punnett squares
Hardy-Weinberg equilibrium
DNA mutations
Neuromuscular junction and motor unit
Pharmacodynamics: Drug-receptor interactions
Cholinergic receptors
Adrenergic receptors
Blood products and transfusion: Clinical
Muscle contraction
Sliding filament model of muscle contraction
Nervous system anatomy and physiology
Parasympathetic nervous system
Slow twitch and fast twitch muscle fibers
Enteric nervous system
Sympathetic nervous system
Resting membrane potential
Neuron action potential
Cell membrane
Selective permeability of the cell membrane
Blood groups and transfusions
Blood components
Oxygen binding capacity and oxygen content
Oxygen-hemoglobin dissociation curve
Body fluid compartments
Movement of water between body compartments
Platelet plug formation (primary hemostasis)
Coagulation (secondary hemostasis)
Clot retraction and fibrinolysis
Carbon dioxide transport in blood
Bones of the vertebral column
Bones of the vertebral column
Joints of the vertebral column
Joints of the vertebral column
Joints of the wrist and hand
Bones of the upper limb
Fascia, vessels and nerves of the upper limb
Anatomy of the brachial plexus
Anatomy of the arm
Muscles of the forearm
Vessels and nerves of the forearm
Muscles of the hand
Anatomy of the sternoclavicular and acromioclavicular joints
Anatomy of the glenohumeral joint
Anatomy of the elbow joint
Anatomy of the radioulnar joints
Paired t-test
Two-sample t-test
Hypothesis testing: One-tailed and two-tailed tests
Methods of regression analysis
Spearman's rank correlation coefficient
Mann-Whitney U test
Chi-squared test
Kaplan-Meier survival analysis
Incidence and prevalence
Relative and absolute risk
Odds ratio
Attributable risk (AR)
Direct standardization
Indirect standardization
Disease causality
Selection bias
Information bias
Confounding
Innate immune system
Complement system
T-cell activation
B-cell activation, differentiation, and contraction
Cell-mediated immunity of natural killer and CD8 cells
Antibody classes
Upper respiratory tract infection
Heart failure
Lipid-lowering medications: Statins
Lipid-lowering medications: Fibrates
Miscellaneous lipid-lowering medications
Dyslipidemias: Pathology review
Atherosclerosis and arteriosclerosis: Pathology review
Familial hypercholesterolemia
Deep vein thrombosis and pulmonary embolism: Pathology review
Chronic venous insufficiency
Ischemia
ECG cardiac infarction and ischemia
Angina pectoris
Aneurysms
Asthma: Clinical
Chronic bronchitis
Emphysema
Pulmonary hypertension
Idiopathic pulmonary fibrosis
Bronchiectasis
Lung cancer
Chronic obstructive pulmonary disease (COPD): Clinical
Respiratory distress syndrome: Pathology review
Myocardial infarction
Vasculitis
ACE inhibitors, ARBs and direct renin inhibitors
Adrenergic receptors
Adrenergic antagonists: Alpha blockers
Class II antiarrhythmics: Beta blockers
Adrenergic antagonists: Beta blockers
Antiplatelet medications
Anticoagulants: Heparin
Anticoagulants: Warfarin
Anticoagulants: Direct factor inhibitors
Calcium channel blockers
cGMP mediated smooth muscle vasodilators
Bronchodilators: Beta 2-agonists and muscarinic antagonists
Bronchodilators: Leukotriene antagonists and methylxanthines
Pulmonary corticosteroids and mast cell inhibitors
Arteriole, venule and capillary histology
Microcirculation and Starling forces
Blood pressure, blood flow, and resistance
Resistance to blood flow
Lymphatic system anatomy and physiology
Laminar flow and Reynolds number
Compliance of blood vessels
Pressures in the cardiovascular system
Physiological changes during exercise
Measuring cardiac output (Fick principle)
Stroke volume, ejection fraction, and cardiac output
Frank-Starling relationship
Pressure-volume loops
Changes in pressure-volume loops
Cardiac work
Cardiac preload
Cardiac afterload
Law of Laplace
Baroreceptors
Renin-angiotensin-aldosterone system
Chemoreceptors
Cardiac conduction system
Action potentials in pacemaker cells
Action potentials in myocytes
Cardiac excitation-contraction coupling
Cardiac contractility
ECG basics
Cerebral circulation
Coronary circulation
Respiratory system anatomy and physiology
Reading a chest X-ray
Lung volumes and capacities
Anatomic and physiologic dead space
Alveolar surface tension and surfactant
Ventilation
Regulation of pulmonary blood flow
Zones of pulmonary blood flow
Pulmonary shunts
Ventilation-perfusion ratios and V/Q mismatch
Airflow, pressure, and resistance
Diffusion-limited and perfusion-limited gas exchange
Gas exchange in the lungs, blood and tissues
Oxygen binding capacity and oxygen content
Oxygen-hemoglobin dissociation curve
Carbon dioxide transport in blood
Carpal tunnel syndrome

Transcript

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Let’s say you want to figure out if people with high body mass index, or BMI, are at a higher risk of hypertension - or high blood pressure.

Let’s say that you decide to go out and find 100 people with hypertension and 100 people without hypertension and find out the BMI of each person in each group.

You might also collect other information about the individuals in each group, like how old they are, if they smoke cigarettes, or if they drink alcohol, since all of these factors can influence a person’s risk of hypertension.

All of these different pieces of information - called variables - can be put together into a single document or file, called a data set.

A data set usually includes independent variables which are thought to influence or change dependent variables.

In our example, the body mass index would be the independent variable and hypertension would be the dependent variable.

The process of collecting, organizing, and analyzing variables in a data set is called statistics, and when the data were collected from living things - like humans, aardvarks, algae, or bacteria - it’s called biostatistics, bio meaning life.

Now, there are two main types of biostatistics.

The first type is descriptive statistics, which is used to describe or summarize information about each individual variable in the data set.

Descriptive statistics can be used to find the mean - the average number calculated from a particular variable, the median - the middle number in a variable, and the mode - the number that occurs the most in the variable.

The descriptive statistics of each variable can be calculated for the whole sample - all 200 people - or in each group separately - the 100 people in the group with hypertension or the other 100 people in the group without hypertension.

For example, we might find that the mean body mass index of all people in the study is 24.5, or that the mean body mass index is 28 for the group with hypertension and 21 for the group without hypertension.

We can also use descriptive statistics to find the range, variance, or standard deviation, all of which are ways of understanding how the data are spread out or distributed for a given variable.

For example, we might find that the lowest measured body mass index in the group with hypertension is 23, and the highest is 33, so the range for body mass index in this group is 23 to 33.

Typically, descriptive statistics are reported in a graph or a table.

The second type of biostatistics is inferential, which is different from descriptive statistics in two ways.

First, inferential statistics looks at relationships between two or more variables, instead of looking at each individual variable.

For example, we could use inferential statistics to explore the relationship between body mass index and hypertension.

We could categorize body mass index into two groups - above 25, or high, and below 25, or low - and we might find that people with high body mass indices have 3 times the odds of hypertension compared to people with low body mass indices.

Typically, inferential statistics are reported by relative risks, attributable risks, odds ratios, or hazard ratios.

The goal of descriptive statistics is to describe how similar or different the study groups in a particular sample population are to one another.

For example, let’s say we use descriptive statistics to find that 72% of people in the group with hypertension are male, but only 16% of people in the group without hypertension are male.

This is an important finding because men tend to have slightly lower body mass indices than women.

As a result, having more men in the group with hypertension, means that the average body mass index in that group will be lower.

Ultimately, if the descriptive statistics find that the study groups are not very similar, we say that the study has low internal validity, and that the results found by inferential statistics may be the result of differences in the two study groups.

On the other hand, the goal of inferential statistics is to apply the results of the sample population to a target population - which is usually just the general population.

So, inferential statistics is concerned about whether or not the two study groups are similar, as well as whether or not the sample population represents the target population.

Ideally, a study should be done on a sample population of individuals that is similar to that target population in every meaningful way.

Key Takeaways

Biostatistics refers to the process of collecting, organizing, and analyzing variables collected from living things. Biostatistics involves design studies to answer specific scientific questions, and the skills necessary to properly analyze the data collected from those studies. It also involves effective communication of the results of analyses to scientists and other non-statisticians.