Miscellaneous genetic disorders: Pathology review

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Miscellaneous genetic disorders: Pathology review

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Human herpesvirus 8 (Kaposi sarcoma)
Herpes simplex virus
Human herpesvirus 6 (Roseola)
Adenovirus
Parvovirus B19
Human papillomavirus
BK virus (Hemorrhagic cystitis)
JC virus (Progressive multifocal leukoencephalopathy)
Poliovirus
Coxsackievirus
Rhinovirus
Hepatitis A and Hepatitis E virus
Influenza virus
Mumps virus
Measles virus
Respiratory syncytial virus
Human parainfluenza viruses
Yellow fever virus
Zika virus
Hepatitis C virus
West Nile virus
Norovirus
Rotavirus
HIV (AIDS)
Rabies virus
Rubella virus
Prions (Spongiform encephalopathy)
Candida
Plasmodium species (Malaria)
Trypanosoma cruzi (Chagas disease)
Protein synthesis inhibitors: Aminoglycosides
Antimetabolites: Sulfonamides and trimethoprim
Antituberculosis medications
Miscellaneous cell wall synthesis inhibitors
Protein synthesis inhibitors: Tetracyclines
Cell wall synthesis inhibitors: Penicillins
Miscellaneous protein synthesis inhibitors
Cell wall synthesis inhibitors: Cephalosporins
DNA synthesis inhibitors: Metronidazole
DNA synthesis inhibitors: Fluoroquinolones
Mechanisms of antibiotic resistance
Integrase and entry inhibitors
Nucleoside reverse transcriptase inhibitors (NRTIs)
Protease inhibitors
Hepatitis medications
Non-nucleoside reverse transcriptase inhibitors (NNRTIs)
Neuraminidase inhibitors
Herpesvirus medications
Azoles
Echinocandins
Miscellaneous antifungal medications
Anthelmintic medications
Antimalarials
Anti-mite and louse medications
Nuclear structure
DNA structure
Transcription of DNA
Translation of mRNA
Gene regulation
Epigenetics
Amino acids and protein folding
Nucleotide metabolism
DNA replication
Lac operon
DNA damage and repair
Cell cycle
Mitosis and meiosis
DNA mutations
Lesch-Nyhan syndrome
Adenosine deaminase deficiency
Purine and pyrimidine synthesis and metabolism disorders: Pathology review
Polymerase chain reaction (PCR) and reverse-transcriptase PCR (RT-PCR)
Gel electrophoresis and genetic testing
ELISA (Enzyme-linked immunosorbent assay)
Karyotyping
DNA cloning
Fluorescence in situ hybridization
Mendelian genetics and punnett squares
Hardy-Weinberg equilibrium
Inheritance patterns
Independent assortment of genes and linkage
Evolution and natural selection
Down syndrome (Trisomy 21)
Edwards syndrome (Trisomy 18)
Patau syndrome (Trisomy 13)
Fragile X syndrome
Huntington disease
Myotonic dystrophy
Friedreich ataxia
Turner syndrome
Klinefelter syndrome
Prader-Willi syndrome
Angelman syndrome
Cri du chat syndrome
Williams syndrome
Alagille syndrome (NORD)
Achondroplasia
Polycystic kidney disease
Familial adenomatous polyposis
Familial hypercholesterolemia
Marfan syndrome
Multiple endocrine neoplasia
Neurofibromatosis
Tuberous sclerosis
von Hippel-Lindau disease
Albinism
Cystic fibrosis
Gaucher disease (NORD)
Glycogen storage disease type I
Glycogen storage disease type II (NORD)
Hemochromatosis
Mucopolysaccharide storage disease type 1 (Hurler syndrome) (NORD)
Leukodystrophy
Niemann-Pick disease types A and B (NORD)
Niemann-Pick disease type C
Phenylketonuria (NORD)
Sickle cell disease (NORD)
Tay-Sachs disease (NORD)
Alpha-thalassemia
Beta-thalassemia
Wilson disease
Alport syndrome
X-linked agammaglobulinemia
Fabry disease (NORD)
Glucose-6-phosphate dehydrogenase (G6PD) deficiency
Hemophilia
Mucopolysaccharide storage disease type 2 (Hunter syndrome) (NORD)
Muscular dystrophy
Wiskott-Aldrich syndrome
Mitochondrial myopathy
Autosomal trisomies: Pathology review
Muscular dystrophies and mitochondrial myopathies: Pathology review
Miscellaneous genetic disorders: Pathology review
Human development days 1-4
Human development days 4-7
Human development week 2
Human development week 3
Ectoderm
Mesoderm
Endoderm
Development of the placenta
Development of the fetal membranes
Development of twins
Hedgehog signaling pathway
Development of the digestive system and body cavities
Development of the umbilical cord
Development of the cardiovascular system
Fetal circulation
Development of the face and palate
Pharyngeal arches, pouches, and clefts
Development of the gastrointestinal system
Development of the teeth
Development of the tongue
Development of the axial skeleton
Development of the muscular system
Development of the renal system
Development of the reproductive system
Development of the respiratory system
Cellular structure and function
Cell membrane
Selective permeability of the cell membrane
Extracellular matrix
Cell-cell junctions
Endocytosis and exocytosis
Osmosis
Resting membrane potential
Nernst equation
Cytoskeleton and intracellular motility
Cell signaling pathways
Adrenoleukodystrophy (NORD)
Zellweger spectrum disorders (NORD)
Ehlers-Danlos syndrome
Peroxisomal disorders: Pathology review
Introduction to biostatistics
Types of data
Probability
Mean, median, and mode
Range, variance, and standard deviation
Standard error of the mean (Central limit theorem)
Normal distribution and z-scores
Paired t-test
Two-sample t-test
Hypothesis testing: One-tailed and two-tailed tests
One-way ANOVA
Two-way ANOVA
Repeated measures ANOVA
Correlation
Methods of regression analysis
Linear regression
Logistic regression
Type I and type II errors
Sensitivity and specificity
Positive and negative predictive value
Test precision and accuracy
Incidence and prevalence
Relative and absolute risk
Odds ratio
Mortality rates and case-fatality
DALY and QALY
Direct standardization
Indirect standardization
Study designs
Ecologic study
Cross sectional study
Case-control study
Cohort study
Randomized control trial
Clinical trials
Sample size
Disease causality
Selection bias
Information bias
Confounding
Interaction
Prevention
Major depressive disorder
Suicide
Bipolar and related disorders
Major depressive disorder with seasonal pattern
Generalized anxiety disorder
Social anxiety disorder
Panic disorder
Phobias
Obsessive-compulsive disorder
Body focused repetitive disorders
Post-traumatic stress disorder
Schizophrenia
Delirium
Amnesia
Dissociative disorders
Anorexia nervosa
Bulimia nervosa
Cluster A personality disorders
Cluster B personality disorders
Cluster C personality disorders
Somatic symptom disorder
Factitious disorder
Tobacco use disorder
Opioid use disorder
Cannabis use disorder
Cocaine use disorder
Alcohol use disorder
Bruxism
Insomnia
Narcolepsy (NORD)
Erectile dysfunction
Attention deficit hyperactivity disorder
Disruptive, impulse control, and conduct disorders
Learning disability
Fetal alcohol syndrome
Tourette syndrome
Autism spectrum disorder
Rett syndrome
Mood disorders: Pathology review
Amnesia, dissociative disorders and delirium: Pathology review
Personality disorders: Pathology review
Eating disorders: Pathology review
Psychological sleep disorders: Pathology review
Psychiatric emergencies: Pathology review
Drug misuse, intoxication and withdrawal: Hallucinogens: Pathology review
Malingering, factitious disorders and somatoform disorders: Pathology review
Trauma- and stress-related disorders: Pathology review
Selective serotonin reuptake inhibitors
Serotonin and norepinephrine reuptake inhibitors
Tricyclic antidepressants
Monoamine oxidase inhibitors
Atypical antidepressants
Typical antipsychotics
Atypical antipsychotics
Lithium
Nonbenzodiazepine anticonvulsants
Anticonvulsants and anxiolytics: Barbiturates
Anticonvulsants and anxiolytics: Benzodiazepines
Psychomotor stimulants

Questions

USMLE® Step 1 style questions USMLE

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Start
A 2-year-old boy is brought to the pediatrician by his parent for a routine checkup. His parent describes him as very friendly, even with strangers. The patient’s growth was slow in the first year of life, where he was placed in the 3rd percentile for weight. His weight improved with a special formula, and he is currently at the 10th percentile for weight. The child was also discovered to have supravalvular aortic stenosis at two months. Physical examination demonstrates a child with a broad nasal bridge, wide forehead, and upturned nose. The child is extremely friendly with the physician. Labs demonstrate hypercalcemia. Which of the following is most likely the disease mechanism in this patient?  

Transcript

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At the clinic, 30 year old Linda comes with her 2 year old toddler for a yearly pediatric checkup. Linda tells the pediatrician that, while she was bathing her son, she noticed that his testes are unusually large. Clinical examination confirms enlarged testes, and additionally, the pediatrician noticed dysmorphic facial features including a long, narrow face; prominent forehead and jaw; and large, protruding ears. Later that day, 27 year old Samantha comes to the clinic with her 5 year old son because she noticed that he often has strange episodes of laughter and smiling. In addition, she mentions that he had experienced seizures several months ago.

Based on the clinical findings, the pediatrician concludes that both children have some form of genetic disorder, and orders genetic testing to confirm the diagnosis. Now, let’s go over genetic disorders such as fragile X syndrome, imprinting disorders, Cri-du-chat syndrome, and Williams syndrome.

First, let’s start with fragile X syndrome. This is an X-linked disorder caused by inactivation of the FMR1 gene, which is located on the long arm of the X chromosome. These individuals have over 200 CGG trinucleotide repeats on the FMR1 gene, which leads to its hypermethylation and subsequent inactivation. Fragile X syndrome is the most common cause of inherited intellectual disability, and the second most common cause of genetically associated psychiatric disorders, after Down syndrome. Individuals with fragile X syndrome can have delayed speech and motor development. In addition, individuals may have anxiety disorders, autism, and attention deficit-hyperactivity disorder; as well as mitral valve prolapse. For your exam, it’s important to know the key physical findings of fragile X syndrome includes enlarged testes, also known as macroorchidism; and dysmorphic facial features, like a long narrow face, with large protruding ears, and prominent forehead and jaw. The treatment of fragile X syndrome includes speech, occupational, and physical therapy. Clinicians should also focus on the prevention of common medical problems associated with the disorder such as gastroesophageal reflux, sinusitis, and otitis media.

Now, let’s move on to imprinting disorders. For most genes, both the maternal and paternal copies are expressed. However, certain genes undergo a normal process called genomic imprinting, where they are silenced via methylation depending on which parent passes them down. Some genes are supposed to be silenced if they are passed down the paternal side, and some are silenced only if they come from the maternal side.

Now, imprinting disorders can be caused by defects in the imprinting process, or due to uniparental disomy, which occurs when a person receives two copies of the same chromosome. Now if both chromosomes come from the father, the child won’t have any active paternally imprinted genes associated with that chromosome. Imprinting disorders may occur sporadically, or can be passed down from an asymptomatic parent. Let’s say in this case, a maternal imprinted gene is mutated and does not work. A biological male gets the mutated gene from their mother, but they’ll be asymptomatic since the maternal version is silenced. However if they pass on this mutated gene to their children, they’ll have a paternal version of the gene that’s active and can develop the disease.

Two well known imprinting disorders are Prader-Willi syndrome and Angelman syndrome. It’s important to note that both syndromes involve defects in chromosome 15, but in Prader-Willi syndrome, the maternal gene is imprinted, so the defect usually comes from the paternal gene. On the other hand, in AngelMan syndrome, the paternal gene is normally imprinted so the defect is in the maternal gene.

Sources

  1. "Robbins Basic Pathology" Elsevier (2017)
  2. "Harrison's Principles of Internal Medicine, Twentieth Edition (Vol.1 & Vol.2)" McGraw-Hill Education / Medical (2018)
  3. "Public Health Literature Review of Fragile X Syndrome" Pediatrics (2017)
  4. "‘Puppet’ Children A Report on Three Cases" Developmental Medicine & Child Neurology (2008)
  5. "Preventive Management of Children with Congenital Anomalies and Syndromes" Cambridge University Press (2000)
  6. "Cri du Chat syndrome" Orphanet Journal of Rare Diseases (2006)