Urinary tract infections: Pathology review

Last updated: June 19, 2025

Urinary tract infections: Pathology review

renal

renal

Medullary sponge kidney
Renal and urinary tract masses: Pathology review
Development of the renal system
Anatomy of the urinary organs of the pelvis
Renal system anatomy and physiology
Urinary tract infections (UTIs): Nursing process (ADPIE)
Urinary tract infections: Clinical
Urinary incontinence: Pathology review
Lower urinary tract infection
Urinary incontinence
Urinary tract infections: Pathology review
Urinary stones in dogs
Glucocorticoids
Adrenal masses and tumors: Clinical
Ureter, bladder and urethra histology
Posterior urethral valves
Congenital renal disorders: Pathology review
Prostate cancer
Bladder exstrophy
Neurogenic bladder
Non-urothelial bladder cancers
Congenital disorders: Clinical
Horseshoe kidney
Multicystic dysplastic kidney
Kidney stones: Clinical
Kidney histology
Chronic kidney disease
Kidney stones
Kidney countercurrent multiplication
Polycystic kidney disease
The role of the kidney in acid-base balance
Chronic kidney disease: Clinical
Medullary cystic kidney disease
Kidney stones: Pathology review
Acute kidney injury: Clinical
Anatomy of the abdominal viscera: Kidneys, ureters and suprarenal glands
Prerenal azotemia
Renal azotemia
Renal cysts and cancer: Clinical
Renal papillary necrosis
Renal failure: Pathology review
Renal agenesis
Focal segmental glomerulosclerosis (NORD)
Acute pyelonephritis
Postrenal azotemia
Rapidly progressive glomerulonephritis
Minimal change disease
Anatomy of the male urogenital triangle
Anatomy clinical correlates: Male pelvis and perineum
Urethritis
Potter sequence
Chronic pyelonephritis
Pediatric urological conditions: Clinical
Vesicoureteral reflux
Hydronephrosis
Androgen insensitivity syndrome
Hypospadias and epispadias
Anatomy of the female urogenital triangle
Anatomy clinical correlates: Female pelvis and perineum
Benign prostatic hyperplasia
5-alpha-reductase deficiency
Anatomy of the gastrointestinal organs of the pelvis and perineum
Anatomy of the muscles and nerves of the posterior abdominal wall
Anatomy of the abdominal viscera: Blood supply of the foregut, midgut and hindgut
Regulation of renal blood flow
Acid-base map and compensatory mechanisms
Renal system anatomy and physiology
Hydration
Body fluid compartments
Movement of water between body compartments
Renal clearance
Glomerular filtration
TF/Px ratio and TF/Pinulin
Measuring renal plasma flow and renal blood flow
Regulation of renal blood flow
Tubular reabsorption and secretion
Tubular secretion of PAH
Tubular reabsorption of glucose
Urea recycling
Tubular reabsorption and secretion of weak acids and bases
Proximal convoluted tubule
Loop of Henle
Distal convoluted tubule
Renin-angiotensin-aldosterone system
Sodium homeostasis
Potassium homeostasis
Phosphate, calcium and magnesium homeostasis
Osmoregulation
Antidiuretic hormone
Kidney countercurrent multiplication
Free water clearance
Vitamin D
Erythropoietin
Physiologic pH and buffers
Buffering and Henderson-Hasselbalch equation
The role of the kidney in acid-base balance
Acid-base map and compensatory mechanisms
Respiratory acidosis
Metabolic acidosis
Plasma anion gap
Respiratory alkalosis
Metabolic alkalosis
Renal artery stenosis
Renal tubular acidosis: Pathology review
Renal tubular acidosis
Renal cortical necrosis
Renal cell carcinoma
Renal tubular defects: Pathology review

Transcript

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Two people came to the Nephrology ward.

The first one is 25 year old Carmen who recently returned from her honeymoon and now complains of suprapubic pain, dysuria and urinary frequency.

The other one is 35 year old Pamela who has had dysuria, fever, nausea and flank pain for the past 2 days.

On physical exam, she has costovertebral angle tenderness.

CBC and urinalysis were done for both people.

They showed that Carmen had a normal white blood cell count, but on the dipstick test, leukocyte esterase and nitrites were both positive.

For Pamela, the white blood count was high, the dipstick test showed positive leukocyte esterase and nitrites, and on microscopy, there’s white blood cell casts in the urine.

Both Pamela and Carmen have urinary tract infections, or UTIs.

This includes the lower portion of the tract like the bladder and urethra, and the upper portion of the tract like the kidneys and ureters.

UTIs are almost always caused by an ascending infection, where bacteria moves from the rectal area to the urethra and then migrate up the urethra and into the bladder.

Normally, bacteria would be washed away with urination, but in some cases, like with E. Coli, that doesn’t happen.

Instead, E. Coli uses little thread-like extensions called fimbriae to bind the uroepithelial cells and colonize the bladder mucosa, causing cystitis.

From the bladder, the infection can go up the ureter and into the kidney, where they attract neutrophils into the renal interstitium, causing pyelonephritis.

As neutrophils die off, they make their way through the urinary tract and appear in the urine.

The neutrophils and the surrounding inflammatory protein debris is even “casted” into the shape of the tubule, creating white blood cell casts and hyaline casts.

For your exams remember that other factors like sexual intercourse or an indwelling catheter can also let bacteria into the urinary tract.

So remember, in ascending infections bacteria moves from the rectal area to the urethra and then migrate up the urethra and into the bladder.

In most cases, ascending infections are caused by Escherichia coli, but other bacteria like Staphylococcus saprophyticus, Klebsiella pneumoniae or Proteus mirabilis can also cause ascending infections.

Now, descending infections are also possible in rare cases.

This is when the kidneys get infected via hematogenous infection, or spread through the bloodstream.

In this case, acute pyelonephritis can be a consequence of septicemia or bacteremia.

In these situations, the most common organisms are Staphylococcus species and again E. coli.

Okay, let’s talk about cystitis.

There are some risk factors associated with cystitis.

It’s more common in female individuals, because they have a shorter urethra, making it easier for the bacteria to ascend and because the urethra is closer to the rectum, where the primary culprits “live”.

Another risk factor is frequent sexual intercourse, which can lead to “honeymoon cystitis,” especially in younger female individuals.

Remember this type of infection is often caused by Staphylococcus saprophyticus.

Other risk factors include diabetes mellitus, indwelling catheter, and impaired bladder emptying, which can happen when there’s a bladder tumor, for example.

Symptoms include dysuria, which is painful urination, urinary frequency and urgency, and suprapubic pain.

CBC, urinalysis, and urine cultures are done to confirm the diagnosis and find the culprit.

On the CBC, the white blood count is normal.

The appearance of the urine is often cloudy and the dipstick test shows positive leukocyte esterase, which signifies pyuria, or the presence of white blood cell in the urine.

Dipstick also shows positive nitrites, and this is caused by enterobacteriaceae, like E.coli, Proteus and Klebsiella, converting normal urine nitrates into nitrites.

On microscopy, there are more than 10 white blood cells per high power field.

The best way to identify the organism for treatment is to do a urine culture.

Now, sometimes cystitis can be mistaken for urethritis, which is the inflammation of the urethra.

Urethritis can present with the same symptoms as cystitis, but the difference is that urethritis is most commonly caused by Neisseria gonorrhoeae and Chlamydia trachomatis.

Both of these are sexually transmitted infections.

With both, urinalysis shows sterile pyuria, meaning that leukocyte esterase is positive, but when cultures are done, no bacteria are found.

Key Takeaways

Urinary tract infections (UTIs) are common bacterial infections that can occur in any part of the urinary tract, including the kidneys, bladder, ureters, and urethra. They are most commonly caused by bacteria, such as E.coli, Klebsiella pneumoniae, Proteus mirabilis, and Staphylococcus saprophyticus.

Symptoms include pain or burning sensation when urinating, frequent urge to urinate, cloudy or strong-smelling urine, pain or pressure in the lower abdomen or back, and in more severe cases, fever or chills.

Risk factors for UTIs include female gender, sex, diabetes mellitus, indwelling catheters, pregnancy, and kidney stones. Complications of untreated or recurrent UTIs can include cystitis, pyelonephritis, and sepsis. Treatment typically involves a course of antibiotics and plenty of fluids to help flush out the bacteria.

Sources

  1. "Robbins Basic Pathology" Elsevier (2017)
  2. "Harrison's Principles of Internal Medicine, Twentieth Edition (Vol.1 & Vol.2)" McGraw-Hill Education / Medical (2018)
  3. "Practical Renal Pathology, A Diagnostic Approach E-Book" Elsevier Health Sciences (2012)
  4. "Diagnosis and management of urinary infections in older people" Clinical Medicine (2011)
  5. "Urinary tract infections in women" European Journal of Obstetrics & Gynecology and Reproductive Biology (2011)
  6. "Uncomplicated Urinary Tract Infection in Adults Including Uncomplicated Pyelonephritis" Urologic Clinics of North America (2008)
  7. "Risk Factors Associated with Acute Pyelonephritis in Healthy Women" Annals of Internal Medicine (2005)
  8. "Diagnosis and Management of Acute Ureterolithiasis" American Journal of Roentgenology (2000)