Swyer syndrome results from mutations in genes that are involved in sex development. Normally, during the first trimester of fetal life, the gonads develop into either testes or ovaries depending on whether a person has an XY or XX karyotype. In males, a gene on the Y chromosome called the sex-determining region Y or SRY gene, helps the fetal gonads turn into testes. Once developed, the testes start producing androgens like testosterone, which are mainly responsible for development of male external genitalia. Internally, there’s a set of ducts called Wolffian and Mullerian ducts. Testosterone also causes the Wolffian ducts to differentiate into the male reproductive system. At the same time, the testes also produce a hormone called anti-Müllerian hormone, which prevents the Müllerian ducts from developing into the female reproductive system and instead makes them degenerate. In females, since there is no Y chromosome, the SRY gene is absent. As a result, the ovaries develop from the internal gonads, and androgen levels remain relatively low, so they develop female external genitalia.
Between 15–20% of individuals with Swyer syndrome have mutations in the SRY gene. When the SRY gene is mutated or nonfunctional, testes fail to develop, and the fetus follows the default pathway of female sexual development, despite having an XY karyotype.
In many other cases, the SRY gene is unaffected and mutations in other genes involved in the sex-determining pathways are often implicated (e.g., SOX9, NR5A1, MAP3K1, DHH).