Extracellular matrix

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Extracellular matrix

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Glycolysis
Citric acid cycle
Electron transport chain and oxidative phosphorylation
Pentose phosphate pathway
Gluconeogenesis
Anticoagulants: Heparin
Anticoagulants: Warfarin
Anticoagulants: Direct factor inhibitors
Thrombolytics
Antiplatelet medications
Mean, median, and mode
Range, variance, and standard deviation
Standard error of the mean (Central limit theorem)
Normal distribution and z-scores
Paired t-test
Two-sample t-test
Hypothesis testing: One-tailed and two-tailed tests
Correlation
Type I and type II errors
Sensitivity and specificity
Positive and negative predictive value
Test precision and accuracy
Incidence and prevalence
Relative and absolute risk
Odds ratio
Mortality rates and case-fatality
DALY and QALY
Direct standardization
Indirect standardization
Ecologic study
Glycogen metabolism
Physiological changes during exercise
Amino acid metabolism
Nitrogen and urea cycle
Fatty acid synthesis
Fatty acid oxidation
Ketone body metabolism
Cholesterol metabolism
Glucose-6-phosphate dehydrogenase (G6PD) deficiency
Lactose intolerance
Cellular structure and function
Cell membrane
Selective permeability of the cell membrane
Extracellular matrix
Cell-cell junctions
Endocytosis and exocytosis
Osmosis
Resting membrane potential
Nernst equation
Cytoskeleton and intracellular motility
Staphylococcus epidermidis
Staphylococcus aureus
Staphylococcus saprophyticus
Streptococcus viridans
Streptococcus pneumoniae
Streptococcus pyogenes (Group A Strep)
Streptococcus agalactiae (Group B Strep)
Enterococcus
Clostridium botulinum (Botulism)
Clostridium perfringens
Clostridium difficile (Pseudomembranous colitis)
Clostridium tetani (Tetanus)
Bacillus cereus (Food poisoning)
Listeria monocytogenes
Corynebacterium diphtheriae (Diphtheria)
Bacillus anthracis (Anthrax)
Nocardia
Escherichia coli
Salmonella (non-typhoidal)
Salmonella typhi (typhoid fever)
Varicella zoster virus
Epstein-Barr virus (Infectious mononucleosis)
Human herpesvirus 8 (Kaposi sarcoma)
Herpes simplex virus
Human herpesvirus 6 (Roseola)
Adenovirus
Parvovirus B19
Human papillomavirus
BK virus (Hemorrhagic cystitis)
JC virus (Progressive multifocal leukoencephalopathy)
Pseudomonas aeruginosa
Enterobacter
Klebsiella pneumoniae
Shigella
Proteus mirabilis
Yersinia enterocolitica
Legionella pneumophila (Legionnaires disease and Pontiac fever)
Serratia marcescens
Bacteroides fragilis
Yersinia pestis (Plague)
Cell signaling pathways
Nuclear structure
DNA structure
Transcription of DNA
Translation of mRNA
Amino acids and protein folding
Nucleotide metabolism
DNA replication
Lac operon
DNA damage and repair
Inflammation
Ischemia
Free radicals and cellular injury
Necrosis and apoptosis
Atrophy, aplasia, and hypoplasia
Metaplasia and dysplasia
Hyperplasia and hypertrophy
Oncogenes and tumor suppressor genes
Cell cycle
Mitosis and meiosis

Transcript

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Cells live within an environment called the extracellular matrix, and it’s a bit like how homes have yards and streets that surround them.

Also, just like how lots of homes form a community, lots of cells form a tissue.

And there are different types of tissues - epithelial, connective, muscular, and nervous tissue.

Each tissue has an extracellular matrix that’s got a unique composition that’s adapted for each tissue’s unique needs.

Having said that, all of the different types of extracellular matrix are made up of three major molecules - adhesive proteins, structural proteins, and proteoglycans.

First, there’s adhesive proteins, which help to stick the individual cells together and organizes the tissue into a neat structure.

Now, adhesive proteins - like integrins and cadherins - are found on the cell’s surface and they’re like molecular velcro.

Cells use adhesive proteins to anchor themselves to other cells and to molecules in the extracellular matrix.

Adhesive proteins also help communicate messages from the extracellular matrix to the cell.

For example, signals relayed by integrins can help a cell decide when it’s time to grow, divide, differentiate, or even die - like in apoptosis.

Next, there are structural proteins which give our tissues their tensile and compressive strength.

Some examples are collagens, elastins, and keratins.

Collagen is the most common type of structural protein in the human body, mostly because it resists tension and it can also stretch.

When collagen is made and released into the extracellular space, it’s in the form of a precursor called procollagen.

Procollagen is a protein made up of three polypeptide strands, each coiled into a left-handed helix, and then all three are twisted together into a right-handed triple helix or "superhelix" with three loose strands at each end.

Once procollagen is in the extracellular space, it encounters a tiny band of enzymes called collagen peptidases that cleave the loose strands at both ends of the procollagen protein, turning procollagen into tropocollagen.

Once there are enough tropocollagen molecules, they bind with one another to form a stack of collagen fibrils.

Collagen fibrils are arranged in different ways depending on the tissue, and when there’s a bunch of collagen fibrils, they can join up to form a bigger tube called a collagen fiber.

The four most common types of collagen are I, II, III, and IV.

Key Takeaways

The extracellular matrix (ECM) refers to the mixture of proteins and carbohydrates that surrounds cells and provides structural and biochemical support. ECM components can be put into three categories: adhesive proteins, structural proteins, and proteoglycans.

Adhesive proteins are needed to stick individual cells together, forming an organized tissue. They include integrins and cadherins. Next, structural proteins provide the tissues with structural support, including tensile strength. These proteins include keratins, and elastin. There are also proteoglycans which fill up the space between cells, helping to trap water molecules thanks to their negative charges.

The ECM also plays an important role in the communication between cells, mediating cell-to-cell interaction and cell-matrix interaction. Dysfunction of the ECM can lead to diseases such as cancer, arthritis, and fibrosis.