Vaccinations

Last updated: June 08, 2026

Vaccinations

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Thymus histology
Spleen histology
Lymph node histology
Introduction to the immune system
Cytokines
Innate immune system
Complement system
T-cell development
B-cell development
MHC class I and MHC class II molecules
T-cell activation
B-cell activation, differentiation, and contraction
Cell-mediated immunity of CD4 cells
Cell-mediated immunity of natural killer and CD8 cells
Antibody classes
Somatic hypermutation and affinity maturation
VDJ rearrangement
Contracting the immune response and peripheral tolerance
B- and T-cell memory
Anergy, exhaustion, and clonal deletion
Vaccinations
Type I hypersensitivity
Type II hypersensitivity
Type III hypersensitivity
Type IV hypersensitivity
Sepsis
Neonatal sepsis
Abscesses
Food allergy
Anaphylaxis
Asthma
Immune thrombocytopenia
Autoimmune hemolytic anemia
Hemolytic disease of the newborn
Rheumatic heart disease
Myasthenia gravis
Graves disease
Pemphigus vulgaris
Serum sickness
Systemic lupus erythematosus
Poststreptococcal glomerulonephritis
Graft-versus-host disease
Contact dermatitis
Transplant rejection
Cytomegalovirus infection after transplant (NORD)
Post-transplant lymphoproliferative disorders (NORD)
X-linked agammaglobulinemia
Selective immunoglobulin A deficiency
Common variable immunodeficiency
IgG subclass deficiency
Hyperimmunoglobulin E syndrome
Isolated primary immunoglobulin M deficiency
Thymic aplasia
DiGeorge syndrome
Severe combined immunodeficiency
Adenosine deaminase deficiency
Ataxia-telangiectasia
Hyper IgM syndrome
Wiskott-Aldrich syndrome
Leukocyte adhesion deficiency
Chediak-Higashi syndrome
Chronic granulomatous disease
Complement deficiency
Hereditary angioedema
Asplenia
Thymoma
Ruptured spleen
Immunodeficiencies: T-cell and B-cell disorders: Pathology review
Immunodeficiencies: Combined T-cell and B-cell disorders: Pathology review
Immunodeficiencies: Phagocyte and complement dysfunction: Pathology review
Glucocorticoids
Bacterial structure and functions
Staphylococcus epidermidis
Staphylococcus aureus
Staphylococcus saprophyticus
Streptococcus viridans
Streptococcus pneumoniae
Streptococcus pyogenes (Group A Strep)
Streptococcus agalactiae (Group B Strep)
Enterococcus
Clostridium perfringens
Clostridium botulinum (Botulism)
Clostridium difficile (Pseudomembranous colitis)
Clostridium tetani (Tetanus)
Bacillus cereus (Food poisoning)
Listeria monocytogenes
Corynebacterium diphtheriae (Diphtheria)
Bacillus anthracis (Anthrax)
Nocardia
Actinomyces israelii
Escherichia coli
Salmonella (non-typhoidal)
Salmonella typhi (typhoid fever)
Pseudomonas aeruginosa
Enterobacter
Klebsiella pneumoniae
Shigella
Proteus mirabilis
Yersinia enterocolitica
Legionella pneumophila (Legionnaires disease and Pontiac fever)
Serratia marcescens
Bacteroides fragilis
Yersinia pestis (Plague)
Vibrio cholerae (Cholera)
Helicobacter pylori
Campylobacter jejuni
Neisseria meningitidis
Neisseria gonorrhoeae
Moraxella catarrhalis
Francisella tularensis (Tularemia)
Bordetella pertussis (Whooping cough)
Brucella
Haemophilus influenzae
Haemophilus ducreyi (Chancroid)
Pasteurella multocida
Mycobacterium tuberculosis (Tuberculosis)
Mycobacterium leprae
Mycobacterium avium complex (NORD)
Mycoplasma pneumoniae
Chlamydia pneumoniae
Chlamydia trachomatis
Borrelia burgdorferi (Lyme disease)
Borrelia species (Relapsing fever)
Leptospira
Treponema pallidum (Syphilis)
Rickettsia rickettsii (Rocky Mountain spotted fever) and other Rickettsia species
Coxiella burnetii (Q fever)
Ehrlichia and Anaplasma
Gardnerella vaginalis (Bacterial vaginosis)
Viral structure and functions
Varicella zoster virus
Cytomegalovirus
Epstein-Barr virus (Infectious mononucleosis)
Human herpesvirus 8 (Kaposi sarcoma)
Herpes simplex virus
Human herpesvirus 6 (Roseola)
Adenovirus
Parvovirus B19
Human papillomavirus
Poxvirus (Smallpox and Molluscum contagiosum)
BK virus (Hemorrhagic cystitis)
JC virus (Progressive multifocal leukoencephalopathy)
Poliovirus
Coxsackievirus
Rhinovirus
Hepatitis A and Hepatitis E virus
Hepatitis D virus
Influenza virus
Mumps virus
Measles virus
Respiratory syncytial virus
Human parainfluenza viruses
Dengue virus
Yellow fever virus
Zika virus
Hepatitis C virus
West Nile virus
Norovirus
Rotavirus
Coronaviruses
HIV (AIDS)
Human T-lymphotropic virus
Ebola virus
Rabies virus
Rubella virus
Eastern and Western equine encephalitis virus
Lymphocytic choriomeningitis virus
Hantavirus
Prions (Spongiform encephalopathy)
Coccidioidomycosis and paracoccidioidomycosis
Histoplasmosis
Blastomycosis
Pneumocystis jirovecii (Pneumocystis pneumonia)
Candida
Mucormycosis
Aspergillus fumigatus
Sporothrix schenckii
Cryptococcus neoformans
Malassezia (Tinea versicolor and Seborrhoeic dermatitis)
Plasmodium species (Malaria)
Babesia
Giardia lamblia
Entamoeba histolytica (Amebiasis)
Cryptosporidium
Acanthamoeba
Naegleria fowleri (Primary amebic meningoencephalitis)
Toxoplasma gondii (Toxoplasmosis)
Trypanosoma brucei
Trypanosoma cruzi (Chagas disease)
Trichomonas vaginalis
Leishmania
Loa loa (Eye worm)
Toxocara canis (Visceral larva migrans)
Onchocerca volvulus (River blindness)
Ascaris lumbricoides
Anisakis
Angiostrongylus (Eosinophilic meningitis)
Ancylostoma duodenale and Necator americanus
Strongyloides stercoralis
Guinea worm (Dracunculiasis)
Wuchereria bancrofti (Lymphatic filariasis)
Trichinella spiralis
Enterobius vermicularis (Pinworm)
Trichuris trichiura (Whipworm)
Echinococcus granulosus (Hydatid disease)
Diphyllobothrium latum
Paragonimus westermani
Clonorchis sinensis
Schistosomes
Pediculus humanus and Phthirus pubis (Lice)
Sarcoptes scabiei (Scabies)
Protein synthesis inhibitors: Aminoglycosides
Antimetabolites: Sulfonamides and trimethoprim
Antituberculosis medications
Miscellaneous cell wall synthesis inhibitors
Protein synthesis inhibitors: Tetracyclines
Cell wall synthesis inhibitors: Penicillins
Miscellaneous protein synthesis inhibitors
Cell wall synthesis inhibitors: Cephalosporins
DNA synthesis inhibitors: Metronidazole
DNA synthesis inhibitors: Fluoroquinolones
Mechanisms of antibiotic resistance
Integrase and entry inhibitors
Nucleoside reverse transcriptase inhibitors (NRTIs)
Protease inhibitors
Hepatitis medications
Non-nucleoside reverse transcriptase inhibitors (NNRTIs)
Neuraminidase inhibitors
Herpesvirus medications
Azoles
Echinocandins
Miscellaneous antifungal medications
Anthelmintic medications
Antimalarials
Anti-mite and louse medications
Advanced cardiac life support (ACLS): Clinical
Supraventricular arrhythmias: Pathology review
Ventricular arrhythmias: Pathology review
Heart blocks: Pathology review
Coronary artery disease: Clinical
Heart failure: Clinical
Syncope: Clinical
Pericardial disease: Clinical
Valvular heart disease: Clinical
Chest trauma: Clinical
Shock: Clinical
Peripheral vascular disease: Clinical
Leg ulcers: Clinical
Aortic aneurysms and dissections: Clinical
Cholinomimetics: Direct agonists
Cholinomimetics: Indirect agonists (anticholinesterases)
Muscarinic antagonists
Sympathomimetics: Direct agonists
Sympatholytics: Alpha-2 agonists
Adrenergic antagonists: Presynaptic
Adrenergic antagonists: Alpha blockers
Adrenergic antagonists: Beta blockers
ACE inhibitors, ARBs and direct renin inhibitors
Loop diuretics
Thiazide and thiazide-like diuretics
Calcium channel blockers
cGMP mediated smooth muscle vasodilators
Class I antiarrhythmics: Sodium channel blockers
Class II antiarrhythmics: Beta blockers
Class III antiarrhythmics: Potassium channel blockers
Class IV antiarrhythmics: Calcium channel blockers and others
Positive inotropic medications
Antiplatelet medications
Blistering skin disorders: Clinical
Bites and stings: Clinical
Burns: Clinical
Diabetes mellitus: Clinical
Hyperthyroidism: Clinical
Hypothyroidism and thyroiditis: Clinical
Parathyroid conditions and calcium imbalance: Clinical
Adrenal insufficiency: Clinical
Neck trauma: Clinical
Insulins
Mineralocorticoids and mineralocorticoid antagonists
Abdominal pain: Clinical
Appendicitis: Clinical
Gastrointestinal bleeding: Clinical
Peptic ulcers and stomach cancer: Clinical
Inflammatory bowel disease: Clinical
Diverticular disease: Clinical
Gallbladder disorders: Clinical
Pancreatitis: Clinical
Cirrhosis: Clinical
Hernias: Clinical
Bowel obstruction: Clinical
Abdominal trauma: Clinical
Laxatives and cathartics
Antidiarrheals
Acid reducing medications
Blood products and transfusion: Clinical
Venous thromboembolism: Clinical
Anticoagulants: Heparin
Anticoagulants: Warfarin
Anticoagulants: Direct factor inhibitors
Thrombolytics
Fever of unknown origin: Clinical
Infective endocarditis: Clinical
Pneumonia: Clinical
Tuberculosis: Pathology review
Diarrhea: Clinical
Urinary tract infections: Clinical
Meningitis, encephalitis and brain abscesses: Clinical
Skin and soft tissue infections: Clinical
Hypernatremia: Clinical
Hyponatremia: Clinical
Hyperkalemia: Clinical
Hypokalemia: Clinical
Metabolic and respiratory acidosis: Clinical
Metabolic and respiratory alkalosis: Clinical
Toxidromes: Clinical
Medication overdoses and toxicities: Pathology review
Environmental and chemical toxicities: Pathology review
Acute kidney injury: Clinical
Kidney stones: Clinical
Stroke: Clinical
Seizures: Clinical
Headaches: Clinical
Traumatic brain injury: Clinical
Lower back pain: Clinical
Spinal cord disorders: Pathology review
Anticonvulsants and anxiolytics: Barbiturates
Anticonvulsants and anxiolytics: Benzodiazepines
Nonbenzodiazepine anticonvulsants
Migraine medications
Osmotic diuretics
Opioid agonists, mixed agonist-antagonists and partial agonists
Opioid antagonists
Asthma: Clinical
Chronic obstructive pulmonary disease (COPD): Clinical
Acute respiratory distress syndrome: Clinical
Pleural effusion: Clinical
Pneumothorax: Clinical
Bronchodilators: Beta 2-agonists and muscarinic antagonists
Pulmonary corticosteroids and mast cell inhibitors
Joint pain: Clinical
Anatomy clinical correlates: Clavicle and shoulder
Anatomy clinical correlates: Axilla
Anatomy clinical correlates: Arm, elbow and forearm
Anatomy clinical correlates: Wrist and hand
Anatomy clinical correlates: Median, ulnar and radial nerves
Anatomy clinical correlates: Bones, joints and muscles of the back
Acetaminophen (Paracetamol)
Non-steroidal anti-inflammatory drugs
Antigout medications
Pediatric allergies: Clinical
Kawasaki disease: Clinical
Congenital TORCH infections: Pathology review
Pediatric infectious rashes: Clinical
Pediatric bone and joint infections: Clinical
Sjogren syndrome: Clinical
Vasculitis: Clinical
Rheumatoid arthritis: Clinical
Seronegative arthritis: Clinical
Systemic lupus erythematosus (SLE): Clinical
Inflammatory myopathies: Clinical
ECG axis
ECG basics
Normal heart sounds
Abnormal heart sounds
Cardiac conduction system
Cardiac conduction velocity
ECG normal sinus rhythm
ECG intervals
ECG QRS transition
ECG rate and rhythm
ECG cardiac infarction and ischemia
ECG cardiac hypertrophy and enlargement
Vasculitis

Transcript

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When you get an infection, you develop adaptive immunity. In other words, you generate memory T and B cells, so if you encounter the same antigen again, they can quickly replicate and respond. Most of the time we think of immunologic memory developing after natural infection. But memory T and B cells can also develop after vaccination. Vaccination is the process of generating a protective adaptive immune response against microbes by exposure to nonpathogenic forms or components of microbes. And that’s the key - getting long-term active protection to a harmful microbe, from something that’s not harmful.

Vaccination also helps to establish herd immunity. Herd immunity is the concept that if enough people in the population - or herd - are vaccinated, then the entire population, even those who are unvaccinated, is less likely to get that infection. This is because the disease has a much lower chance of spreading to unvaccinated individuals when herd immunity is established. The percentage of people within a herd that need to be vaccinated to maintain herd immune status varies depending on the pathogen. When too few people in a herd are vaccinated, there are more people in the population that are able to get the illness and then spread it to others.

Vaccination is an active process of developing immunity. This is different from passive immunity, which is where a person gets antibodies that are made by another person or animal like a horse or mouse, or by cells in a lab. A common form of passive immunity is when antibodies are pooled from human donors and are given intravenously - called intravenous immunoglobulin or IVIG. Passive immunity lasts for only as long as the antibodies last - usually weeks to months.

The antibodies that an infant receives from their mother in utero or during breastfeeding are other examples of passive immunity. IgG antibodies in the blood cross the placenta, initially protecting the baby from some of the pathogens that mom has already made antibodies to. These maternal IgG antibodies will be degraded around six months of age. IgA antibodies are plentiful in breast milk and are passed to the baby during breastfeeding. These antibodies provide protection from pathogens that may be found at mucosal sites. Once a baby weans off breastmilk, these IgA antibodies are no longer present.

Vaccines can be administered five different ways: intramuscularly, intradermally, subcutaneously, intranasally, or orally. Typically, a vaccine is considered successful if it results in a strong antigen-specific antibody titer, meaning that most recipients generate a strong antibody response to the vaccine. Other determinants of a successful vaccine are a strong cellular immunity response, and the vaccine’s overall effectiveness at preventing disease.

When a patient receives a vaccine, CD4+ helper T cells are activated and produce cytokines like IFN gamma, IL-4 and IL-2 to promote growth of immune cells and class switching of activated B cells. Once activated, B cells will first differentiate into plasma cells that produce IgM antibodies, followed by class switching to produce other antibody types such as IgG or IgA. The exact antibody response depends on the route and type of vaccine. For example, most intramuscular vaccinations lead to IgG production, while the rotavirus vaccine, which is given orally, leads to IgA production.

There are five main types of vaccines: Live attenuated, inactivated, subunit, toxoid, and messenger ribonucleic acid, or mRNA, vaccines. Live attenuated and inactivated vaccines are whole cell vaccines, which means that the whole virus or bacteria is used to create the vaccine. Subunit and toxoid vaccines are considered fractionated vaccines because only one part of the pathogen is used to create the vaccine. Finally, mRNA vaccines are a type of nucleic acid vaccine, where genetic instructions are delivered to host cells so they can produce pathogen proteins that trigger an immune response.

Live vaccines are attenuated, meaning the pathogen has been weakened in the laboratory to make it less pathogenic, but still able to replicate in the vaccinated person so that it can stimulate an immune response. In fact, the immune response to a live attenuated vaccine is almost identical to what happens in a natural infection. Live vaccines are used to protect against measles, mumps, rubella, and varicella; as well as rotavirus, smallpox, and yellow fever.

Inactivated vaccines use a pathogen that has been killed using heat or chemical fixation with formalin. The immune response is mostly humoral, or antibody mediated, with strong activation of plasma cells to make antibodies, and less cellular immunity - meaning, less T cell response. As a result, the immunity generated by inactivated vaccines is not as robust as that from natural infection or from a live vaccine. Because immunity can wane over time, patients may require “booster shots” or additional doses of the vaccine to maintain protection. Inactivated vaccines are used to protect against hepatitis A, polio, rabies, and influenza.

Subunit vaccines contain only the portions of pathogens that our bodies respond to - such as polysaccharides or proteins. These vaccines include the most immunogenic pieces of the pathogen - basically the antigens for that pathogen that most immune cells respond to. For example, immune cells react strongly to the polysaccharides on Streptococcus pneumoniae, and that’s why the vaccine contains those polysaccharides. The immune response to a polysaccharide vaccine is considered T cell independent because T cells can only respond to protein antigens, and not polysaccharides.

Key Takeaways

Vaccinations, also known as immunizations, are a way to protect individuals from infectious diseases. Vaccines work by stimulating the immune system to recognize and fight specific pathogens, such as viruses or bacteria. They allow us to develop active immunity where a protective adaptive immune response is made to pathogens without causing disease in the patient.

There are four main types of vaccines: Live attenuated, inactivated, subunit, and toxoid vaccines. Live attenuated and inactivated vaccines are whole-cell vaccines, which means that the whole virus or bacteria is used to create the vaccine. Subunit and toxoid vaccines are considered fractionated vaccines because only one part of the pathogen is used to create the vaccine. Vaccines are typically given through injections, nasal sprays, or oral doses, and are usually recommended for infants and young children, as well as for adults who may be at risk for certain infectious diseases. Some vaccines, such as the flu vaccine, need to be given annually, while others provide lifelong protection after a series of doses.

Sources

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  2. "Robbins & Cotran Pathologic Basis of Disease (Robbins Pathology) (10th ed.)ISBN 9780323531139 " Elsevier (2020)
  3. "CURRENT Medical Diagnosis and Treatment 2020. ISBN 978-1-26-045528-1 " McGraw-Hill Education / Medical (2019)
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