Fanconi Anemia · What It Is, Causes, Signs and Symptoms, Treatment, and More

Published: Jan 16, 2026
Author: Emily Miao, PharmD, MD
Editor: Józia McGowan, DO
Editor: Kelsey LaFayette, DNP, ARNP, FNP-C
Illustrator: Jannat Day
7-day free trial

Go deeper with Osmosis

Osmosis is a learning platform with videos, questions, and AI tools to help you master topics like this.

4.8 · 12,000+ reviews
Watch quick, visual videos
Practice with Qbank-style questions
Use AI to explain, quiz, and review
Study anytime with the mobile app
Start free trial

No credit card · Cancel anytime

What is Fanconi anemia?

Fanconi anemia (FA) is a rare genetic disorder characterized by progressive deficiency of bone marrow cell production (i.e., red blood cellswhite blood cells, and platelets) and congenital physical abnormalities. FA falls under a category of bone marrow failure syndromes, which are a category of blood disorders in which the bone marrow is unable to produce adequate blood counts. These disorders can either affect a specific blood cell lineage (e.g., red blood cells only) as seen in myelodysplastic syndromes, or all blood cell lineages (e.g., red blood cellswhite blood cells, and platelets), as seen in aplastic anemia. While aplastic anemia and FA are similar in that they both result in bone marrow failure, the etiologies are different. Aplastic anemia is often acquired (i.e., adverse effect of a medication side effect such as chemotherapy), whereas FA is caused by inherited genetic mutations. The incidence of FA is approximately 1 in 136,000 live births and is more common among people of Ashkenazi Jewish and South African descent 

Learn deeper with Osmosis

Master this topic faster with videos, questions, and AI.

Used by 8M+ healthcare learners.

Start free trial

No credit card · Cancel anytime

What causes Fanconi anemia?

FA is thought to be caused by a variety of gene mutations that encode proteins involved in the deoxyribonucleic acid (DNA) damage and repair pathway. DNA damage occurs to most people daily and the DNA damage and repair pathway helps facilitate breaks and rearrangements on chromosomes to repair the DNA. Individuals with FA are unable to repair erroneous DNA efficiently and therefore, are prone to chromosome instability (i.e., unable to rearrange and chromosomes break easily). The majority of FA cases are due to genetic mutations in either FANCAFANCC, or FANCG. These genes are crucial in producing components of the DNA repair pathway and without these proteins, individuals accumulate a build-up of erroneous proteins and DNA damage resulting in abnormal cell growth and death. For this reason, people with FA are at an increased risk of developing acute myeloid leukemia, a type of cancer of the blood-forming cells in the bone marrow; and solid tumors of the head and neck, skin, gastrointestinal and genital tract.  
 
FA is inherited in an autosomal recessive manner, meaning the affected individual must inherit two copies of an abnormal gene, one from each parent. If the individual only inherits one abnormal gene, they are considered a carrier and will usually not display any symptoms.

What are the signs and symptoms of Fanconi anemia?

Signs and symptoms of FA are heterogeneous and vary from individual to individual, however, the most common symptoms are congenital physical abnormalities and bone marrow failure. Signs and symptoms may include a small head (i.e., microcephaly), digit abnormalities (e.g., extra or deformed thumbs, missing or incompletely developed fingers), skeletal abnormalities (e.g., scoliosis), structural kidney problems (e.g., underdeveloped kidneys), underdeveloped gastrointestinal system (e.g., absence of an anus), light to dark brown pigmented birthmarks called cafe au lait spots, ophthalmologic abnormalities including strabismus (i.e., misalignment of the eyes), and structural cardiac abnormalities (e.g., a defect in tissues separating the heart chambers).  

Individuals with FA have progressive bone marrow failure that often presents in the first decade of life. Bone marrow failure results in pancytopenia, or low counts of red blood cells (i.e., anemia), white blood cells (i.e., leukopenia), and platelets (i.e., thrombocytopenia).  

Anemia may cause excessive fatigue, weakness, lightheadedness, shortness of breath, pale skin color, and increased heart rate. Additionally, leukopenia may increase the risk of infections, as the body has low levels of immune cells to fight infection. Thrombocytopenia may manifest as easy bruising and spontaneous bleeding from mucous membranes (e.g., gums). 

How is Fanconi anemia diagnosed?

Diagnosis of FA begins with a thorough review of symptoms and medical and family history. Diagnostic delays can be common since bone marrow failure does not present until the first decade of life and congenital physical abnormalities may be subtle. Laboratory testing with a complete blood count (CBC) may reveal the presence of cytopenias (i.e., low levels of red or white blood cells or platelets). Additional imaging tests such as X-rays and ultrasound imaging can be performed to assess the extent and severity of structural abnormalities (e.g., underdeveloped bones, kidney, and gastrointestinal structural abnormalities). 
 
Several indications exist for screening a child or young adult with the following: 
(i) Persistent moderate to severe cytopenia, such that there are two or more lineages of cytopenias for more than two weeks, in the absence of malignancy, chemotherapy, active severe infection, or other known medical cause; 

(ii) At least three of the following physical abnormalities: vertebral/spinal anomalies, anal atresia, congenital heart disease, tracheoesophageal abnormalities, renal structure abnormalities, limb anomalies, short stature, cafe au lait spots, and digit abnormalities; 

(iii) A family history of FA. 

Other scenarios where screening for FA may be considered include individuals with unexplained and persistent cytopenias, young individuals (i.e., <40 years old) with myelodysplastic syndrome or blood disorders, development of squamous cell cancer of the head, neck, or anorectal region without attributable exposure, and those with prior history of chemotherapy or radiation therapy 

chromosome breakage test using a sample of peripheral blood is used to detect defective DNA repair that is observed in FA. If the chromosome breakage test is positive, then a next-generation sequencing test is used to identify the specific genetic mutation and to confirm the diagnosis of FA. 

How is Fanconi anemia treated?

Treatment of FA consists of pharmacologic and supportive care strategies aimed at addressing bone marrow failure and routine screening for early detection of malignancies. Individuals may benefit from a multidisciplinary team of specialists to ensure comprehensive care. If structural deformities are severe, surgical correction may be warranted (e.g., absence of an anus or esophagus). Androgen therapy improves blood counts in approximately half of individuals with FA. For example, red blood cell counts typically improve, as indicated by increases in hemoglobin, within the first few months of treatment. Growth factors such as granulocyte colony-stimulating factor (G-CSF) can improve white blood cell counts.  

The only established curative treatment for FA is either a stem cell transplant (i.e., transplant procedure that utilizes a healthy donor’s stem cells from the bloodstream) or a bone marrow transplant (i.e., transplant procedure that utilizes a healthy donor’s stem cells from the bone marrow). Individuals with FA can be referred to a specialized stem cell transplant center and a specialized hematologist for an initial evaluation and to discuss the risks and benefits of transplantation. Laboratory testing with CBC is used to monitor for blood count improvements. A bone marrow aspiration, which utilizes a thin needle to remove a small amount of liquid from the bone marrow, can be performed to assess cellular and chromosomal morphology, and for human leukocyte antigen-typing (i.e., used to match affected individuals and donors for bone marrow transplantation).  

Finally, individuals should follow up with a primary care physician and hematologist for routine disease monitoring and screening for early-onset malignancies. Genetic counseling is recommended for individuals and families to understand the risk of passing the genetic mutations to future generations.

What are the most important facts to know about Fanconi anemia?

Fanconi anemia (FA) is a rare, genetic disorder characterized by progressive deficiency of bone marrow cell production and congenital physical abnormalities. FA is thought to be caused by a variety of gene mutations that encode for proteins involved in the DNA damage and repair pathway. Individuals with FA are unable to repair erroneous DNA in an efficient manner and therefore, are prone to chromosome instability. The majority of FA cases are caused by genetic mutations in either FANCAFANCC and FANCGSigns and symptoms of FA are heterogeneous and vary from individual to individual, however the most common symptoms are congenital physical abnormalities (e.g., short stature, cafe au lait spots), bone marrow failure, and an increased risk of malignancy. A chromosomal breakage test is useful for screening for FA, while genetic testing with next generation sequencing is used to provide molecular confirmation. The only established curative treatment for FA is a stem cell or bone marrow transplantIndividuals should follow-up with a primary care physician and hematologist for routine blood count monitoring and screening for early onset malignancies.   

Key Takeaways

Definition 

Fanconi anemia (FA) is a rare genetic disorder characterized by progressive deficiency of bone marrow cell production (i.e., red blood cells, white blood cells, and platelets) and congenital physical abnormalities. It is one of the bone marrow failure syndromes. It occurs in 1 in 136,000 live births and is more common among people of Ashkenazi Jewish and South African descent 

Bone Marrow Failure Syndromes 

- Blood disorders in which the bone marrow can’t produce adequate blood counts  

- Can affect:  

     - One blood cell lineage (myelodysplastic syndromes 

     - All blood cell lineages (aplastic anemia 

- Aplastic anemia vs Fanconi anemia: 

     - Aplastic anemia: acquired  

     - Fanconi anemia: inherited  

Causes 

- Gene mutations in DNA damage and repair pathway  

     - FANCA 

     - FANCC 

     - FANCG  

     → accumulation of erroneous proteins and DNA damage → abnormal cell growth and death 

- Autosomal recessive inheritance 

*Increased risk of acute myeloid leukemia and solid tumors in head and neck, skin, gastrointestinal, and genital tract.  

Signs and Symptoms 

Heterogeneous among individuals. Most common:  

- Congenital abnormalities: 

     - Microcephaly  

     - Digit abnormalities  

     - Skeletal abnormalities (e.g., scoliosis) 

     - Structural kidney problems  

     - Underdeveloped gastrointestinal system (e.g., absence of an anus 

     - Cafe au lait spots  

     - Ophthalmologic abnormalities (e.g., strabismus 

     - Structural cardiac abnormalities 

- Progressive bone marrow failure:  

     - Often presents in first decade of life  

     - Pancytopenia 

          - Anemia → excessive fatigue, weakness, lightheadedness, shortness of breath, pale skin color, increased heart rate 

          - Leukopenia → increased risk of infection  

          - Thrombocytopeniaeasy bruising and spontaneous bleeding  

Diagnosis  

- Often delayed: 

     - Bone marrow failure does not present until first decade of life  

     - Congenital abnormalities may be subtle 

 - Review of symptoms and medical and family history  

- Laboratory testing (CBC, chromosome breakage test, next-generation sequencing) 

- Imaging (X-ray, ultrasound) to assess structural abnormalities  

- Indications for screening:  

     - Persistent moderate-severe cytopenia (two or more lineages for more than two weeks) in the absence of malignancy, chemotherapy, active severe infection, other known causes  

     - At least three of the following:  

          - Vertebral/spinal anomalies  

          - Anal atresia  

          - Congenital heart disease  

          - Tracheoesophageal abnormalities 

          - Renal structure abnormalities 

          - Limb anomalies, short stature 

          - Cafe au lait spots 

          - Digit abnormalities

     - Family history of FA 

     - Persistent and unexplained cytopenias  

     - Young individuals with myelodysplastic syndromes or blood disorders  

     - Development of squamous cancer of the head, neck, or anorectal region with no attributable exposure  

     - Prior history of chemotherapy or radiation therapy  

Treatment 

- Pharmacologic and supportive care  

- Multidisciplinary team of specialists 

- Surgical correction of physical deformities (if severe)  

- Strategies to improve blood count 

     - Androgen therapy  

     - Growth factors (e.g., G-CSF) 

- Curative treatments*:  

     - Stem cell transplant  

     - Bone marrow transplant  

     *In specialized centers, after risk-benefit evaluation  

- Follow-up for routine disease monitoring and screening for early-onset malignancies  

- Genetic counseling  

Students say Osmosis is 100% worth it

Because Osmosis saves them time. Lowers stress. And actually helps them remember when it counts.

I used Osmosis to prepare for my first medical school licensing exam! Super helpful and interactive for people who may not do great with just pages of text info!

Cecilia Ruiz

Cecilia Ruiz

MD student

Sayan Misra

I have used Osmosis for about four years. Best thing I have ever used for my medical studies.

Sayan Misra

Sayan Misra

Med student

Osmosis videos are superior because they define simple concepts, tell a story with a clear progression, and provide context.

Jay Pate

Jay Pate

Dental student

References


Bagby GC, Alter BP. Fanconi anemia. Semin Hematol. 2006;43(3):147-156. doi:10.1053/j.seminhematol.2006.04.005 


Fanconi Anemia Clinical Care Guidelines, Fifth Edition 2020. Fanconi Anemia Research Fund. Accessed May 9, 2024. https://www.fanconi.org/images/uploads/other/Fanconi_Anemia_Clinical_Care_Guidelines_5thEdition_web.pdf 


Longerich S, Li J, Xiong Y, Sung P, Kupfer GM. Stress and DNA repair biology of the Fanconi anemia pathway. Blood. 2014;124(18):2812-2819. doi:10.1182/blood-2014-04-526293  


National Organization for Rare Disorders (NORD). Fanconi Anemia. Accessed May 9, 2024. https://rarediseases.org/rare-diseases/fanconi-anemia/. 


Ogilvie P, Hofmann UB, Bröcker EB, Hamm H. Hautmanifestationen der Fanconi-Anämie [Skin manifestations of Fanconi anemia]. Hautarzt. 2002;53(4):253-257. doi:10.1007/s001050100236 


Taniguchi T, D'Andrea AD. Molecular pathogenesis of Fanconi anemia: Recent progress. Blood. 2006;107(11):4223-4233. doi:10.1182/blood-2005-10-4240