Immunodeficiencies: T-cell and B-cell disorders: Pathology review

Last updated: November 01, 2022

Immunodeficiencies: T-cell and B-cell disorders: Pathology review

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Thymus histology
Spleen histology
Lymph node histology
Introduction to the immune system
Cytokines
Innate immune system
Complement system
T-cell development
B-cell development
MHC class I and MHC class II molecules
T-cell activation
B-cell activation, differentiation, and contraction
Cell-mediated immunity of CD4 cells
Cell-mediated immunity of natural killer and CD8 cells
Antibody classes
Somatic hypermutation and affinity maturation
VDJ rearrangement
Contracting the immune response and peripheral tolerance
B- and T-cell memory
Anergy, exhaustion, and clonal deletion
Vaccinations
Type I hypersensitivity
Type II hypersensitivity
Type III hypersensitivity
Type IV hypersensitivity
Sepsis
Neonatal sepsis
Abscesses
Food allergy
Anaphylaxis
Asthma
Immune thrombocytopenia
Autoimmune hemolytic anemia
Hemolytic disease of the newborn
Rheumatic heart disease
Myasthenia gravis
Graves disease
Pemphigus vulgaris
Serum sickness
Systemic lupus erythematosus
Poststreptococcal glomerulonephritis
Graft-versus-host disease
Contact dermatitis
Transplant rejection
Cytomegalovirus infection after transplant (NORD)
Post-transplant lymphoproliferative disorders (NORD)
X-linked agammaglobulinemia
Selective immunoglobulin A deficiency
Common variable immunodeficiency
IgG subclass deficiency
Hyperimmunoglobulin E syndrome
Isolated primary immunoglobulin M deficiency
Thymic aplasia
DiGeorge syndrome
Severe combined immunodeficiency
Adenosine deaminase deficiency
Ataxia-telangiectasia
Hyper IgM syndrome
Wiskott-Aldrich syndrome
Leukocyte adhesion deficiency
Chediak-Higashi syndrome
Chronic granulomatous disease
Complement deficiency
Hereditary angioedema
Asplenia
Thymoma
Ruptured spleen
Immunodeficiencies: T-cell and B-cell disorders: Pathology review
Immunodeficiencies: Combined T-cell and B-cell disorders: Pathology review
Immunodeficiencies: Phagocyte and complement dysfunction: Pathology review
Glucocorticoids
Bacterial structure and functions
Staphylococcus epidermidis
Staphylococcus aureus
Staphylococcus saprophyticus
Streptococcus viridans
Streptococcus pneumoniae
Streptococcus pyogenes (Group A Strep)
Streptococcus agalactiae (Group B Strep)
Enterococcus
Clostridium perfringens
Clostridium botulinum (Botulism)
Clostridium difficile (Pseudomembranous colitis)
Clostridium tetani (Tetanus)
Bacillus cereus (Food poisoning)
Listeria monocytogenes
Corynebacterium diphtheriae (Diphtheria)
Bacillus anthracis (Anthrax)
Nocardia
Actinomyces israelii
Escherichia coli
Salmonella (non-typhoidal)
Salmonella typhi (typhoid fever)
Pseudomonas aeruginosa
Enterobacter
Klebsiella pneumoniae
Shigella
Proteus mirabilis
Yersinia enterocolitica
Legionella pneumophila (Legionnaires disease and Pontiac fever)
Serratia marcescens
Bacteroides fragilis
Yersinia pestis (Plague)
Vibrio cholerae (Cholera)
Helicobacter pylori
Campylobacter jejuni
Neisseria meningitidis
Neisseria gonorrhoeae
Moraxella catarrhalis
Francisella tularensis (Tularemia)
Bordetella pertussis (Whooping cough)
Brucella
Haemophilus influenzae
Haemophilus ducreyi (Chancroid)
Pasteurella multocida
Mycobacterium tuberculosis (Tuberculosis)
Mycobacterium leprae
Mycobacterium avium complex (NORD)
Mycoplasma pneumoniae
Chlamydia pneumoniae
Chlamydia trachomatis
Borrelia burgdorferi (Lyme disease)
Borrelia species (Relapsing fever)
Leptospira
Treponema pallidum (Syphilis)
Rickettsia rickettsii (Rocky Mountain spotted fever) and other Rickettsia species
Coxiella burnetii (Q fever)
Ehrlichia and Anaplasma
Gardnerella vaginalis (Bacterial vaginosis)
Viral structure and functions
Varicella zoster virus
Cytomegalovirus
Epstein-Barr virus (Infectious mononucleosis)
Human herpesvirus 8 (Kaposi sarcoma)
Herpes simplex virus
Human herpesvirus 6 (Roseola)
Adenovirus
Parvovirus B19
Human papillomavirus
Poxvirus (Smallpox and Molluscum contagiosum)
BK virus (Hemorrhagic cystitis)
JC virus (Progressive multifocal leukoencephalopathy)
Poliovirus
Coxsackievirus
Rhinovirus
Hepatitis A and Hepatitis E virus
Hepatitis D virus
Influenza virus
Mumps virus
Measles virus
Respiratory syncytial virus
Human parainfluenza viruses
Dengue virus
Yellow fever virus
Zika virus
Hepatitis C virus
West Nile virus
Norovirus
Rotavirus
Coronaviruses
HIV (AIDS)
Human T-lymphotropic virus
Ebola virus
Rabies virus
Rubella virus
Eastern and Western equine encephalitis virus
Lymphocytic choriomeningitis virus
Hantavirus
Prions (Spongiform encephalopathy)
Coccidioidomycosis and paracoccidioidomycosis
Histoplasmosis
Blastomycosis
Pneumocystis jirovecii (Pneumocystis pneumonia)
Candida
Mucormycosis
Aspergillus fumigatus
Sporothrix schenckii
Cryptococcus neoformans
Malassezia (Tinea versicolor and Seborrhoeic dermatitis)
Plasmodium species (Malaria)
Babesia
Giardia lamblia
Entamoeba histolytica (Amebiasis)
Cryptosporidium
Acanthamoeba
Naegleria fowleri (Primary amebic meningoencephalitis)
Toxoplasma gondii (Toxoplasmosis)
Trypanosoma brucei
Trypanosoma cruzi (Chagas disease)
Trichomonas vaginalis
Leishmania
Loa loa (Eye worm)
Toxocara canis (Visceral larva migrans)
Onchocerca volvulus (River blindness)
Ascaris lumbricoides
Anisakis
Angiostrongylus (Eosinophilic meningitis)
Ancylostoma duodenale and Necator americanus
Strongyloides stercoralis
Guinea worm (Dracunculiasis)
Wuchereria bancrofti (Lymphatic filariasis)
Trichinella spiralis
Enterobius vermicularis (Pinworm)
Trichuris trichiura (Whipworm)
Echinococcus granulosus (Hydatid disease)
Diphyllobothrium latum
Paragonimus westermani
Clonorchis sinensis
Schistosomes
Pediculus humanus and Phthirus pubis (Lice)
Sarcoptes scabiei (Scabies)
Protein synthesis inhibitors: Aminoglycosides
Antimetabolites: Sulfonamides and trimethoprim
Antituberculosis medications
Miscellaneous cell wall synthesis inhibitors
Protein synthesis inhibitors: Tetracyclines
Cell wall synthesis inhibitors: Penicillins
Miscellaneous protein synthesis inhibitors
Cell wall synthesis inhibitors: Cephalosporins
DNA synthesis inhibitors: Metronidazole
DNA synthesis inhibitors: Fluoroquinolones
Mechanisms of antibiotic resistance
Integrase and entry inhibitors
Nucleoside reverse transcriptase inhibitors (NRTIs)
Protease inhibitors
Hepatitis medications
Non-nucleoside reverse transcriptase inhibitors (NNRTIs)
Neuraminidase inhibitors
Herpesvirus medications
Azoles
Echinocandins
Miscellaneous antifungal medications
Anthelmintic medications
Antimalarials
Anti-mite and louse medications
Advanced cardiac life support (ACLS): Clinical
Supraventricular arrhythmias: Pathology review
Ventricular arrhythmias: Pathology review
Heart blocks: Pathology review
Coronary artery disease: Clinical
Heart failure: Clinical
Syncope: Clinical
Pericardial disease: Clinical
Valvular heart disease: Clinical
Chest trauma: Clinical
Shock: Clinical
Peripheral vascular disease: Clinical
Leg ulcers: Clinical
Aortic aneurysms and dissections: Clinical
Cholinomimetics: Direct agonists
Cholinomimetics: Indirect agonists (anticholinesterases)
Muscarinic antagonists
Sympathomimetics: Direct agonists
Sympatholytics: Alpha-2 agonists
Adrenergic antagonists: Presynaptic
Adrenergic antagonists: Alpha blockers
Adrenergic antagonists: Beta blockers
ACE inhibitors, ARBs and direct renin inhibitors
Loop diuretics
Thiazide and thiazide-like diuretics
Calcium channel blockers
cGMP mediated smooth muscle vasodilators
Class I antiarrhythmics: Sodium channel blockers
Class II antiarrhythmics: Beta blockers
Class III antiarrhythmics: Potassium channel blockers
Class IV antiarrhythmics: Calcium channel blockers and others
Positive inotropic medications
Antiplatelet medications
Blistering skin disorders: Clinical
Bites and stings: Clinical
Burns: Clinical
Diabetes mellitus: Clinical
Hyperthyroidism: Clinical
Hypothyroidism and thyroiditis: Clinical
Parathyroid conditions and calcium imbalance: Clinical
Adrenal insufficiency: Clinical
Neck trauma: Clinical
Insulins
Mineralocorticoids and mineralocorticoid antagonists
Abdominal pain: Clinical
Appendicitis: Clinical
Gastrointestinal bleeding: Clinical
Peptic ulcers and stomach cancer: Clinical
Inflammatory bowel disease: Clinical
Diverticular disease: Clinical
Gallbladder disorders: Clinical
Pancreatitis: Clinical
Cirrhosis: Clinical
Hernias: Clinical
Bowel obstruction: Clinical
Abdominal trauma: Clinical
Laxatives and cathartics
Antidiarrheals
Acid reducing medications
Blood products and transfusion: Clinical
Venous thromboembolism: Clinical
Anticoagulants: Heparin
Anticoagulants: Warfarin
Anticoagulants: Direct factor inhibitors
Thrombolytics
Fever of unknown origin: Clinical
Infective endocarditis: Clinical
Pneumonia: Clinical
Tuberculosis: Pathology review
Diarrhea: Clinical
Urinary tract infections: Clinical
Meningitis, encephalitis and brain abscesses: Clinical
Skin and soft tissue infections: Clinical
Hypernatremia: Clinical
Hyponatremia: Clinical
Hyperkalemia: Clinical
Hypokalemia: Clinical
Metabolic and respiratory acidosis: Clinical
Metabolic and respiratory alkalosis: Clinical
Toxidromes: Clinical
Medication overdoses and toxicities: Pathology review
Environmental and chemical toxicities: Pathology review
Acute kidney injury: Clinical
Kidney stones: Clinical
Stroke: Clinical
Seizures: Clinical
Headaches: Clinical
Traumatic brain injury: Clinical
Lower back pain: Clinical
Spinal cord disorders: Pathology review
Anticonvulsants and anxiolytics: Barbiturates
Anticonvulsants and anxiolytics: Benzodiazepines
Nonbenzodiazepine anticonvulsants
Migraine medications
Osmotic diuretics
Opioid agonists, mixed agonist-antagonists and partial agonists
Opioid antagonists
Asthma: Clinical
Chronic obstructive pulmonary disease (COPD): Clinical
Acute respiratory distress syndrome: Clinical
Pleural effusion: Clinical
Pneumothorax: Clinical
Bronchodilators: Beta 2-agonists and muscarinic antagonists
Pulmonary corticosteroids and mast cell inhibitors
Joint pain: Clinical
Anatomy clinical correlates: Clavicle and shoulder
Anatomy clinical correlates: Axilla
Anatomy clinical correlates: Arm, elbow and forearm
Anatomy clinical correlates: Wrist and hand
Anatomy clinical correlates: Median, ulnar and radial nerves
Anatomy clinical correlates: Bones, joints and muscles of the back
Acetaminophen (Paracetamol)
Non-steroidal anti-inflammatory drugs
Antigout medications
Pediatric allergies: Clinical
Kawasaki disease: Clinical
Congenital TORCH infections: Pathology review
Pediatric infectious rashes: Clinical
Pediatric bone and joint infections: Clinical
Sjogren syndrome: Clinical
Vasculitis: Clinical
Rheumatoid arthritis: Clinical
Seronegative arthritis: Clinical
Systemic lupus erythematosus (SLE): Clinical
Inflammatory myopathies: Clinical
ECG axis
ECG basics
Normal heart sounds
Abnormal heart sounds
Cardiac conduction system
Cardiac conduction velocity
ECG normal sinus rhythm
ECG intervals
ECG QRS transition
ECG rate and rhythm
ECG cardiac infarction and ischemia
ECG cardiac hypertrophy and enlargement
Vasculitis

Transcript

Watch video only

Gaia, a 6 year old girl, is brought to the clinic by her parents because she’s been having diarrhea and abdominal cramps for the past few weeks.

When you ask about her clinical history, her parents tell you that Gaia was diagnosed with celiac disease a few years back; however, they point out that she's stopped consuming any food products that may contain gluten altogether.

You decide to first run stool tests, which reveal the presence of the parasite giardia lamblia.

In addition, Gaia’s parents tell you that she has a history of asthma and allergic rhinitis, so you also order an immunoglobulin test, which shows low IgA and increased IgE levels in her blood.

Next comes Joe, a 10 year old boy that’s brought to the clinic because he fell and broke his arm.

Upon physical examination, you notice a red, weeping rash on his scalp.

You also notice that there’s a skin abscess on his leg that lacks any surrounding warmth and redness.

Joe’s parents tell you that he develops abscesses like that all the time.

You order an immunoglobulin test for Joe too, which reveals increased IgE but normal IgA levels.

Based on the initial presentation, both cases seem to have some form of immunodeficiency, meaning that their immune system's ability to fight pathogens is compromised.

Immunodeficiencies can be classified according to the cell of the immune system that is defective, into B cell and T cell disorders, which respectively lead to a deficiency in humoral or antibody-mediated and cell-mediated immune responses.

Let’s begin with B cell disorders, starting with Bruton or X-linked agammaglobulinemia, or XLA for short.

This is caused by a mutation in the BTK gene, which is found on the X chromosome.

XLA is an X-linked recessive condition, so it almost exclusively manifests in biological males because they have only one X chromosome.

On the other hand, biological females have two X chromosomes, so even if they have a defective BTK gene on one chromosome, they still have another functional one.

Now, the BTK gene codes for an enzyme called Bruton’s tyrosine kinase or BTK, which has an important role in the maturation process of the B cells at the bone marrow.

Normally, once B cells are mature and ready, they can migrate from the bone marrow to the spleen, where they’re exposed to antigens, and finally move into the blood or lymph and become an antibody-secreting plasma cell.

With XLA, though, there’s a mutation in the BTK gene that makes the BTK enzyme ineffective.

As a result, the B cell maturation process stops at the bone marrow, so these B cells can't leave it to become plasma cells.

Ultimately, people with XLA completely lack or have far fewer circulating B cells, so they also lack circulating antibodies of all classes.

The end result is a deficiency of B cell and antibody-mediated immunity.

Symptoms of XLA are typically absent until after 6 months of age, which is when they run out of the mother’s supply of immunoglobulins that they received through the placenta during pregnancy.

And that’s a very high yield concept to keep in mind!

Now, after 6 months of age, children with XLA become very susceptible to recurrent infections.

For your exams, remember that these infections are typically caused by encapsulated bacteria, so Streptococcus pneumoniae, Neisseria meningitidis, Klebsiella, Haemophilus influenzae, and Pseudomonas aeruginosa.

Most often, these bacterial infections affect the respiratory tract, causing sinusitis, otitis media, pharyngitis, bronchitis, and pneumonia.

Less commonly, children with XLA may also get viral infections, especially from enteroviruses like polio and coxsackievirus, as well as protozoal infections from intestinal parasites like giardia lamblia.

Having said that, it’s important to remember that T-cell mediated immunity remains intact, and some viral, fungal, and protozoal infections can still be cleared.

Another high yield fact is that these individuals must avoid live attenuated vaccines, like the live polio vaccine, because the lack of antibodies makes even certain weakened pathogens tough to destroy.

Diagnosis typically begins with a physical examination, where lymph nodes and tonsils are diminished in size.

For your exams, remember that this is known as lymphoid hypoplasia, and is due to the lack of primary follicles and germinal centers, which are normally the B cell compartments in healthy lymphoid tissues.

The next step for diagnosis involves blood tests revealing the complete absence of B cells, as well as decreased levels of all immunoglobulin classes.

Finally, diagnosis can be confirmed through genetic tests looking for the mutated BTK gene.

Treatment for XLA includes lifelong intravenous infusion of immunoglobulins, and if there is a bacterial infection, these individuals should be started on antibiotics right away.

Next up, selective IgA deficiency is the most common and least serious immunodeficiency.

Though the exact mutation is unknown, the end result is a failure of IgA-producing B cells to mature into plasma cells.

As a result, these individuals have low levels of IgA, which is normally the main antibody protecting the mucous membranes lining the respiratory and gastrointestinal tracts.

However, what's important to keep in mind is that the production of other antibodies isn’t affected.

For that reason, most children with selective IgA deficiency have no symptoms, but some of them may have an increased tendency to develop recurrent infections involving the respiratory or gastrointestinal tracts.

A high yield gastrointestinal pathogen is the parasite giardia lamblia, which is responsible for a diarrheal condition known as giardiasis.

In addition, there’s an increased frequency of atopy, mainly manifesting as asthma, rhinitis, and dermatitis, as well as autoimmune diseases like rheumatoid arthritis and celiac disease, although the link between them is not fully understood.

Finally, some individuals develop severe anaphylactic reactions when they’re transfused with blood containing IgA, because the IgA is recognized like a foreign antigen and attacked by the immune system.

Diagnosis is based on blood tests showing low IgA levels, normal levels of IgM and IgG, and sometimes, increased IgE.

There’s no specific treatment for selective IgA deficiency.

The last B cell disorder you should know for your exams is common variable immunodeficiency, or CVID for short.

Now, the exact mutation that causes CVID remains largely unknown, but it is thought to result from a combination of several mutations that ultimately make mature B cells unable to differentiate into antibody-producing plasma cells.

For your exams, it’s important not to confuse this with X-linked agammaglobulinemia, where there’s an absence of mature B cells altogether.

As the name suggests, symptoms tend to vary a lot.

Most often, they first appear during puberty or early adulthood, and include recurrent infections, mainly of the respiratory tract.

Over time, if these infections are not properly treated, they can lead to the development of bronchiectasis, meaning their bronchi become abnormally enlarged.

And that’s a high yield fact!

In addition, for unknown reasons, individuals with CVID are at an increased risk of developing malignancies, especially lymphomas, as well as autoimmune conditions like autoimmune anemia, thrombocytopenia, or arthritis.

For diagnosis, what you must know is that laboratory tests demonstrate an overall decrease in plasma cells and immunoglobulins.

Also, it’s important to note that genetic testing can’t confirm the diagnosis of CVID, but it can be useful to rule out similar conditions, such as X-linked agammaglobulinemia.

Treatment for CVID includes lifelong intravenous infusion of immunoglobulins.

In addition, individuals with autoimmune conditions may require immunosuppressive treatment with corticosteroids, while recurrent bacterial infections can be treated with antibiotics.

Okay, next are T cell disorders.

Let’s start from a very high yield disease, which is 22q11.2 deletion syndrome, also called thymic aplasia.

If these names don’t ring a bell, you probably know it as DiGeorge syndrome, which is in fact one presentation of 22q11.2 deletion syndrome along with velocardiofacial syndrome.

Now, 22q11.2 deletion syndrome is an autosomal dominant condition where the q11.2 portion of DNA on chromosome 22 is deleted, and this region encodes for some really important genes, one of which is the TBX1 gene.

Now, TBX1 gene is involved in normal embryonic development of the pharyngeal pouches, which are fetal structures that develop into parts of the head and neck.

More specifically, for your exams you should know that the ones affected are the third pharyngeal pouch, which goes on to develop into the thymus and the inferior parathyroid glands, as well as the fourth pouch, which goes on to develop into the superior parathyroid glands.

So with a 22q11.2 deletion and therefore no TBX1 gene, the thymus and parathyroid gland both end up hypoplastic, meaning that they are underdeveloped.

And that’s a high yield fact!

Now, parathyroid gland hypoplasia leads to low levels of parathyroid hormone, which causes hypocalcemia or low levels of calcium in blood, and this can manifest as osteoporosis and tetany, or involuntary contraction of mus

On the other hand, thymic hypoplasia results in a T cell disorder, since the thymus is where T cells mature.

As a result, these individuals are more susceptible to recurrent infections.

Often within 6 months of age, infants begin having recurrent or severe infections from common viruses like Varicella zoster virus, or opportunistic fungi like Candida albicans and Pneumocystis jiroveci, and bacteria like nontuberculous Mycobacteria.

Sources

  1. "Robbins Basic Pathology" Elsevier (2017)
  2. "Harrison's Principles of Internal Medicine, Twentieth Edition (Vol.1 & Vol.2)" McGraw-Hill Education / Medical (2018)
  3. "Analysis of Clinical Presentations of Bruton Disease: A Review of 20 Years of Accumulated Data from Pediatric Patients at Severance Hospital" Yonsei Medical Journal (2008)
  4. "Allergy and Asthma: Practical Diagnosis and Management" McGraw Hill Professional (2007)
  5. "Selective IgA deficiency (SIgAD) and common variable immunodeficiency (CVID)" Clinical and Experimental Immunology (2000)
  6. "Long-term follow-up of health in blood donors with primary selective IgA deficiency" Journal of Clinical Immunology (1996)